Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3867 and HP15_3868 are separated by 2 nucleotides HP15_3868 and HP15_3869 are separated by 150 nucleotides HP15_3869 and HP15_3870 are separated by 101 nucleotides
HP15_3867: HP15_3867 - SPFH domain, Band 7 family protein, at 4,093,705 to 4,094,739
_3867
HP15_3868: HP15_3868 - nodulation efficiency, NfeD-like protein, at 4,094,742 to 4,095,248
_3868
HP15_3869: HP15_3869 - short-chain dehydrogenase/reductase SDR, at 4,095,399 to 4,096,220
_3869
HP15_3870: HP15_3870 - diguanylate cyclase, at 4,096,322 to 4,097,422
_3870
Position (kb)
4095
4096
4097 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4094.520 kb on - strand, within HP15_3867 at 4094.631 kb on + strand, within HP15_3867 at 4094.665 kb on - strand at 4094.705 kb on + strand at 4094.987 kb on + strand, within HP15_3868 at 4094.995 kb on - strand, within HP15_3868 at 4095.095 kb on - strand, within HP15_3868 at 4095.224 kb on - strand at 4095.246 kb on - strand at 4095.403 kb on - strand at 4095.442 kb on + strand at 4095.453 kb on + strand at 4095.461 kb on - strand at 4095.461 kb on - strand at 4095.478 kb on - strand at 4095.494 kb on - strand, within HP15_3869 at 4095.499 kb on + strand, within HP15_3869 at 4095.509 kb on + strand, within HP15_3869 at 4095.637 kb on + strand, within HP15_3869 at 4095.645 kb on - strand, within HP15_3869 at 4095.683 kb on + strand, within HP15_3869 at 4095.698 kb on + strand, within HP15_3869 at 4095.761 kb on - strand, within HP15_3869 at 4095.780 kb on + strand, within HP15_3869 at 4095.831 kb on + strand, within HP15_3869 at 4095.901 kb on - strand, within HP15_3869 at 4096.032 kb on + strand, within HP15_3869 at 4096.046 kb on + strand, within HP15_3869 at 4096.158 kb on + strand at 4096.166 kb on - strand at 4096.168 kb on - strand at 4096.324 kb on + strand at 4096.356 kb on + strand at 4096.356 kb on + strand at 4096.371 kb on + strand at 4096.384 kb on - strand at 4096.519 kb on - strand, within HP15_3870 at 4096.562 kb on - strand, within HP15_3870 at 4096.568 kb on + strand, within HP15_3870 at 4096.624 kb on - strand, within HP15_3870 at 4096.726 kb on - strand, within HP15_3870 at 4096.782 kb on - strand, within HP15_3870 at 4096.808 kb on - strand, within HP15_3870 at 4096.858 kb on + strand, within HP15_3870 at 4096.879 kb on + strand, within HP15_3870 at 4096.993 kb on + strand, within HP15_3870 at 4097.014 kb on + strand, within HP15_3870 at 4097.021 kb on + strand, within HP15_3870 at 4097.022 kb on - strand, within HP15_3870 at 4097.034 kb on + strand, within HP15_3870 at 4097.042 kb on - strand, within HP15_3870 at 4097.084 kb on - strand, within HP15_3870 at 4097.175 kb on + strand, within HP15_3870 at 4097.183 kb on - strand, within HP15_3870 at 4097.183 kb on - strand, within HP15_3870
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 4,094,520 - HP15_3867 0.79 -1.5 4,094,631 + HP15_3867 0.89 -0.4 4,094,665 - -0.9 4,094,705 + +2.3 4,094,987 + HP15_3868 0.48 +0.7 4,094,995 - HP15_3868 0.50 +0.0 4,095,095 - HP15_3868 0.70 +0.1 4,095,224 - +0.7 4,095,246 - -0.7 4,095,403 - +1.9 4,095,442 + +0.1 4,095,453 + +0.3 4,095,461 - -0.8 4,095,461 - -0.8 4,095,478 - +0.5 4,095,494 - HP15_3869 0.12 +0.3 4,095,499 + HP15_3869 0.12 +0.9 4,095,509 + HP15_3869 0.13 -1.5 4,095,637 + HP15_3869 0.29 +0.5 4,095,645 - HP15_3869 0.30 -0.1 4,095,683 + HP15_3869 0.35 +0.1 4,095,698 + HP15_3869 0.36 -0.7 4,095,761 - HP15_3869 0.44 +0.3 4,095,780 + HP15_3869 0.46 -1.1 4,095,831 + HP15_3869 0.53 -0.3 4,095,901 - HP15_3869 0.61 -0.4 4,096,032 + HP15_3869 0.77 +0.7 4,096,046 + HP15_3869 0.79 -0.5 4,096,158 + -0.1 4,096,166 - -0.8 4,096,168 - -0.3 4,096,324 + +0.3 4,096,356 + -0.4 4,096,356 + +1.6 4,096,371 + -0.8 4,096,384 - -2.4 4,096,519 - HP15_3870 0.18 -0.4 4,096,562 - HP15_3870 0.22 -0.5 4,096,568 + HP15_3870 0.22 +1.4 4,096,624 - HP15_3870 0.27 +0.7 4,096,726 - HP15_3870 0.37 -2.4 4,096,782 - HP15_3870 0.42 +0.0 4,096,808 - HP15_3870 0.44 -0.4 4,096,858 + HP15_3870 0.49 -1.0 4,096,879 + HP15_3870 0.51 -1.9 4,096,993 + HP15_3870 0.61 -1.7 4,097,014 + HP15_3870 0.63 -0.4 4,097,021 + HP15_3870 0.63 -0.7 4,097,022 - HP15_3870 0.64 +0.4 4,097,034 + HP15_3870 0.65 -0.4 4,097,042 - HP15_3870 0.65 -0.2 4,097,084 - HP15_3870 0.69 -0.3 4,097,175 + HP15_3870 0.77 +0.1 4,097,183 - HP15_3870 0.78 -0.6 4,097,183 - HP15_3870 0.78 -2.4
Or see this region's nucleotide sequence