Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3864 and HP15_3865 are separated by 2 nucleotides HP15_3865 and HP15_3866 are separated by 143 nucleotides HP15_3866 and HP15_3867 are separated by 14 nucleotides
HP15_3864: HP15_3864 - secreted protein containing DUF748, at 4,089,337 to 4,092,162
_3864
HP15_3865: HP15_3865 - periplasmic binding protein, at 4,092,165 to 4,092,953
_3865
HP15_3866: HP15_3866 - metal dependent phosphohydrolase, at 4,093,097 to 4,093,690
_3866
HP15_3867: HP15_3867 - SPFH domain, Band 7 family protein, at 4,093,705 to 4,094,739
_3867
Position (kb)
4093
4094 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4092.117 kb on - strand at 4092.140 kb on + strand at 4092.201 kb on + strand at 4092.340 kb on - strand, within HP15_3865 at 4092.395 kb on + strand, within HP15_3865 at 4092.445 kb on + strand, within HP15_3865 at 4092.453 kb on - strand, within HP15_3865 at 4092.566 kb on + strand, within HP15_3865 at 4092.578 kb on + strand, within HP15_3865 at 4092.628 kb on + strand, within HP15_3865 at 4092.690 kb on - strand, within HP15_3865 at 4092.762 kb on + strand, within HP15_3865 at 4092.798 kb on - strand, within HP15_3865 at 4093.139 kb on - strand at 4093.209 kb on - strand, within HP15_3866 at 4093.270 kb on - strand, within HP15_3866 at 4093.311 kb on + strand, within HP15_3866 at 4093.319 kb on - strand, within HP15_3866 at 4093.388 kb on + strand, within HP15_3866 at 4093.498 kb on + strand, within HP15_3866 at 4093.506 kb on - strand, within HP15_3866 at 4093.506 kb on - strand, within HP15_3866 at 4093.664 kb on - strand at 4093.664 kb on - strand at 4093.675 kb on - strand at 4093.824 kb on - strand, within HP15_3867 at 4093.824 kb on - strand, within HP15_3867 at 4093.871 kb on + strand, within HP15_3867 at 4093.996 kb on + strand, within HP15_3867 at 4094.059 kb on - strand, within HP15_3867 at 4094.180 kb on + strand, within HP15_3867 at 4094.251 kb on - strand, within HP15_3867 at 4094.310 kb on + strand, within HP15_3867 at 4094.320 kb on + strand, within HP15_3867 at 4094.520 kb on - strand, within HP15_3867 at 4094.631 kb on + strand, within HP15_3867 at 4094.665 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 4,092,117 - -0.4 4,092,140 + +2.6 4,092,201 + +0.3 4,092,340 - HP15_3865 0.22 +0.5 4,092,395 + HP15_3865 0.29 -0.0 4,092,445 + HP15_3865 0.35 -0.3 4,092,453 - HP15_3865 0.37 -0.3 4,092,566 + HP15_3865 0.51 +0.5 4,092,578 + HP15_3865 0.52 -0.4 4,092,628 + HP15_3865 0.59 -0.9 4,092,690 - HP15_3865 0.67 -0.7 4,092,762 + HP15_3865 0.76 +0.5 4,092,798 - HP15_3865 0.80 +0.2 4,093,139 - +1.6 4,093,209 - HP15_3866 0.19 -0.9 4,093,270 - HP15_3866 0.29 -0.6 4,093,311 + HP15_3866 0.36 -0.2 4,093,319 - HP15_3866 0.37 -1.1 4,093,388 + HP15_3866 0.49 +0.1 4,093,498 + HP15_3866 0.68 -1.2 4,093,506 - HP15_3866 0.69 -0.0 4,093,506 - HP15_3866 0.69 -2.5 4,093,664 - +0.7 4,093,664 - +0.1 4,093,675 - +0.6 4,093,824 - HP15_3867 0.11 +0.6 4,093,824 - HP15_3867 0.11 -0.1 4,093,871 + HP15_3867 0.16 +0.3 4,093,996 + HP15_3867 0.28 +1.6 4,094,059 - HP15_3867 0.34 -0.1 4,094,180 + HP15_3867 0.46 +0.1 4,094,251 - HP15_3867 0.53 -2.0 4,094,310 + HP15_3867 0.58 -0.4 4,094,320 + HP15_3867 0.59 +0.0 4,094,520 - HP15_3867 0.79 -1.5 4,094,631 + HP15_3867 0.89 -0.4 4,094,665 - -0.9
Or see this region's nucleotide sequence