Experiment: m.b. Furfuryl Alcohol 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00050 and PGA1_65p00060 overlap by 4 nucleotides PGA1_65p00060 and PGA1_65p00070 are separated by 951 nucleotides
PGA1_65p00050: PGA1_65p00050 - hypothetical protein, at 7,427 to 8,269
_65p00050
PGA1_65p00060: PGA1_65p00060 - putative regulatory protein, LuxR family, at 8,266 to 9,465
_65p00060
PGA1_65p00070: PGA1_65p00070 - putative regulatory protein, LuxR family, at 10,417 to 11,217
_65p00070
Position (kb)
8
9
10 Strain fitness (log2 ratio)
-1
0
1
2
3 at 7.325 kb on - strand at 7.475 kb on + strand at 7.492 kb on - strand at 7.573 kb on + strand, within PGA1_65p00050 at 8.058 kb on - strand, within PGA1_65p00050 at 8.060 kb on + strand, within PGA1_65p00050 at 8.273 kb on + strand at 8.365 kb on + strand at 8.670 kb on - strand, within PGA1_65p00060 at 8.832 kb on + strand, within PGA1_65p00060 at 9.052 kb on + strand, within PGA1_65p00060 at 9.055 kb on + strand, within PGA1_65p00060 at 9.081 kb on + strand, within PGA1_65p00060 at 9.239 kb on + strand, within PGA1_65p00060 at 9.247 kb on - strand, within PGA1_65p00060 at 9.258 kb on + strand, within PGA1_65p00060 at 9.276 kb on - strand, within PGA1_65p00060 at 9.276 kb on - strand, within PGA1_65p00060 at 9.311 kb on - strand, within PGA1_65p00060 at 9.347 kb on + strand at 9.375 kb on - strand at 9.449 kb on + strand at 9.459 kb on + strand at 9.546 kb on - strand at 9.867 kb on + strand at 9.928 kb on + strand at 9.985 kb on - strand at 10.013 kb on - strand at 10.062 kb on - strand at 10.119 kb on + strand at 10.121 kb on + strand at 10.299 kb on - strand at 10.345 kb on + strand at 10.461 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.032 vol% remove 7,325 - -1.2 7,475 + +0.8 7,492 - +0.3 7,573 + PGA1_65p00050 0.17 -0.1 8,058 - PGA1_65p00050 0.75 +1.2 8,060 + PGA1_65p00050 0.75 -1.0 8,273 + +1.3 8,365 + -0.2 8,670 - PGA1_65p00060 0.34 +0.8 8,832 + PGA1_65p00060 0.47 +1.3 9,052 + PGA1_65p00060 0.66 +0.7 9,055 + PGA1_65p00060 0.66 +3.2 9,081 + PGA1_65p00060 0.68 +0.8 9,239 + PGA1_65p00060 0.81 +2.3 9,247 - PGA1_65p00060 0.82 -0.5 9,258 + PGA1_65p00060 0.83 -0.2 9,276 - PGA1_65p00060 0.84 +1.0 9,276 - PGA1_65p00060 0.84 -1.2 9,311 - PGA1_65p00060 0.87 +2.3 9,347 + -1.0 9,375 - +1.7 9,449 + +0.3 9,459 + -0.9 9,546 - +2.5 9,867 + -1.7 9,928 + +0.8 9,985 - +0.2 10,013 - -0.7 10,062 - +0.6 10,119 + +1.8 10,121 + +0.9 10,299 - +2.3 10,345 + -0.2 10,461 - +1.3
Or see this region's nucleotide sequence