Experiment: m.b. Furfuryl Alcohol 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03950 and PGA1_c03960 are separated by 0 nucleotides PGA1_c03960 and PGA1_c03970 are separated by 198 nucleotides
PGA1_c03950: PGA1_c03950 - putative permease protein, at 381,663 to 382,757
_c03950
PGA1_c03960: PGA1_c03960 - ribose import ATP-binding protein RbsA, at 382,758 to 384,287
_c03960
PGA1_c03970: PGA1_c03970 - putative lipoprotein, at 384,486 to 385,481
_c03970
Position (kb) 382
383
384
385 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 381.854 kb on + strand, within PGA1_c03950 at 381.881 kb on - strand, within PGA1_c03950 at 381.895 kb on - strand, within PGA1_c03950 at 381.961 kb on - strand, within PGA1_c03950 at 382.012 kb on - strand, within PGA1_c03950 at 382.250 kb on - strand, within PGA1_c03950 at 382.314 kb on - strand, within PGA1_c03950 at 382.345 kb on - strand, within PGA1_c03950 at 382.359 kb on - strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.413 kb on - strand, within PGA1_c03950 at 382.475 kb on + strand, within PGA1_c03950 at 382.483 kb on - strand, within PGA1_c03950 at 382.488 kb on + strand, within PGA1_c03950 at 382.494 kb on + strand, within PGA1_c03950 at 382.494 kb on + strand, within PGA1_c03950 at 382.543 kb on + strand, within PGA1_c03950 at 382.546 kb on - strand, within PGA1_c03950 at 382.576 kb on + strand, within PGA1_c03950 at 382.588 kb on + strand, within PGA1_c03950 at 382.599 kb on + strand, within PGA1_c03950 at 382.606 kb on + strand, within PGA1_c03950 at 382.674 kb on + strand at 382.704 kb on - strand at 382.708 kb on - strand at 382.746 kb on + strand at 382.777 kb on + strand at 382.783 kb on + strand at 382.783 kb on + strand at 382.783 kb on + strand at 382.791 kb on - strand at 383.012 kb on + strand, within PGA1_c03960 at 383.132 kb on + strand, within PGA1_c03960 at 383.140 kb on - strand, within PGA1_c03960 at 383.178 kb on + strand, within PGA1_c03960 at 383.178 kb on + strand, within PGA1_c03960 at 383.180 kb on + strand, within PGA1_c03960 at 383.188 kb on - strand, within PGA1_c03960 at 383.235 kb on + strand, within PGA1_c03960 at 383.243 kb on - strand, within PGA1_c03960 at 383.243 kb on - strand, within PGA1_c03960 at 383.352 kb on + strand, within PGA1_c03960 at 383.355 kb on - strand, within PGA1_c03960 at 383.367 kb on - strand, within PGA1_c03960 at 383.367 kb on - strand, within PGA1_c03960 at 383.406 kb on + strand, within PGA1_c03960 at 383.414 kb on - strand, within PGA1_c03960 at 383.476 kb on + strand, within PGA1_c03960 at 383.476 kb on + strand, within PGA1_c03960 at 383.484 kb on - strand, within PGA1_c03960 at 383.494 kb on + strand, within PGA1_c03960 at 383.502 kb on - strand, within PGA1_c03960 at 383.556 kb on + strand, within PGA1_c03960 at 383.564 kb on + strand, within PGA1_c03960 at 383.572 kb on - strand, within PGA1_c03960 at 383.631 kb on + strand, within PGA1_c03960 at 383.639 kb on - strand, within PGA1_c03960 at 383.687 kb on + strand, within PGA1_c03960 at 383.695 kb on - strand, within PGA1_c03960 at 383.695 kb on - strand, within PGA1_c03960 at 383.695 kb on - strand, within PGA1_c03960 at 383.697 kb on + strand, within PGA1_c03960 at 383.730 kb on - strand, within PGA1_c03960 at 383.733 kb on + strand, within PGA1_c03960 at 383.748 kb on - strand, within PGA1_c03960 at 383.756 kb on - strand, within PGA1_c03960 at 383.779 kb on + strand, within PGA1_c03960 at 383.814 kb on + strand, within PGA1_c03960 at 383.943 kb on - strand, within PGA1_c03960 at 383.958 kb on - strand, within PGA1_c03960 at 384.016 kb on + strand, within PGA1_c03960 at 384.024 kb on - strand, within PGA1_c03960 at 384.024 kb on - strand, within PGA1_c03960 at 384.025 kb on - strand, within PGA1_c03960 at 384.118 kb on + strand, within PGA1_c03960 at 384.126 kb on - strand, within PGA1_c03960 at 384.130 kb on + strand, within PGA1_c03960 at 384.139 kb on + strand at 384.157 kb on - strand at 384.200 kb on + strand at 384.208 kb on - strand at 384.222 kb on - strand at 384.228 kb on + strand at 384.228 kb on + strand at 384.229 kb on + strand at 384.239 kb on + strand at 384.239 kb on + strand at 384.239 kb on + strand at 384.239 kb on + strand at 384.239 kb on + strand at 384.239 kb on + strand at 384.242 kb on - strand at 384.247 kb on - strand at 384.293 kb on - strand at 384.303 kb on - strand at 384.304 kb on - strand at 384.325 kb on + strand at 384.328 kb on - strand at 384.472 kb on + strand at 384.519 kb on + strand at 384.525 kb on + strand at 384.533 kb on - strand at 384.572 kb on - strand at 384.640 kb on + strand, within PGA1_c03970 at 384.648 kb on - strand, within PGA1_c03970 at 384.648 kb on - strand, within PGA1_c03970 at 384.659 kb on - strand, within PGA1_c03970 at 384.668 kb on - strand, within PGA1_c03970 at 384.677 kb on + strand, within PGA1_c03970 at 384.685 kb on - strand, within PGA1_c03970 at 384.698 kb on + strand, within PGA1_c03970 at 384.736 kb on + strand, within PGA1_c03970 at 384.857 kb on + strand, within PGA1_c03970 at 384.890 kb on + strand, within PGA1_c03970 at 384.891 kb on - strand, within PGA1_c03970 at 384.897 kb on + strand, within PGA1_c03970 at 384.898 kb on - strand, within PGA1_c03970 at 384.898 kb on - strand, within PGA1_c03970 at 384.898 kb on - strand, within PGA1_c03970 at 384.955 kb on + strand, within PGA1_c03970 at 385.035 kb on + strand, within PGA1_c03970 at 385.048 kb on - strand, within PGA1_c03970 at 385.089 kb on + strand, within PGA1_c03970 at 385.097 kb on - strand, within PGA1_c03970 at 385.133 kb on - strand, within PGA1_c03970 at 385.133 kb on - strand, within PGA1_c03970 at 385.278 kb on - strand, within PGA1_c03970
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.032 vol% remove 381,854 + PGA1_c03950 0.17 +0.3 381,881 - PGA1_c03950 0.20 -0.7 381,895 - PGA1_c03950 0.21 -0.3 381,961 - PGA1_c03950 0.27 -0.4 382,012 - PGA1_c03950 0.32 -0.8 382,250 - PGA1_c03950 0.54 -0.8 382,314 - PGA1_c03950 0.59 +0.0 382,345 - PGA1_c03950 0.62 +0.3 382,359 - PGA1_c03950 0.64 -0.3 382,390 + PGA1_c03950 0.66 +0.2 382,390 + PGA1_c03950 0.66 +0.6 382,390 + PGA1_c03950 0.66 -2.9 382,390 + PGA1_c03950 0.66 -0.9 382,390 + PGA1_c03950 0.66 -0.2 382,390 + PGA1_c03950 0.66 -1.1 382,390 + PGA1_c03950 0.66 -1.9 382,390 + PGA1_c03950 0.66 -0.8 382,390 + PGA1_c03950 0.66 -0.2 382,413 - PGA1_c03950 0.68 -0.3 382,475 + PGA1_c03950 0.74 +0.7 382,483 - PGA1_c03950 0.75 +1.9 382,488 + PGA1_c03950 0.75 -0.4 382,494 + PGA1_c03950 0.76 -2.4 382,494 + PGA1_c03950 0.76 -0.3 382,543 + PGA1_c03950 0.80 -0.4 382,546 - PGA1_c03950 0.81 +0.6 382,576 + PGA1_c03950 0.83 +0.3 382,588 + PGA1_c03950 0.84 +0.1 382,599 + PGA1_c03950 0.85 -0.3 382,606 + PGA1_c03950 0.86 +0.1 382,674 + -0.5 382,704 - -0.8 382,708 - -0.8 382,746 + +0.9 382,777 + +0.4 382,783 + -0.2 382,783 + -0.3 382,783 + -0.2 382,791 - -1.0 383,012 + PGA1_c03960 0.17 +1.4 383,132 + PGA1_c03960 0.24 +1.7 383,140 - PGA1_c03960 0.25 -0.1 383,178 + PGA1_c03960 0.27 -2.6 383,178 + PGA1_c03960 0.27 +1.2 383,180 + PGA1_c03960 0.28 -1.1 383,188 - PGA1_c03960 0.28 -0.5 383,235 + PGA1_c03960 0.31 -0.5 383,243 - PGA1_c03960 0.32 -0.7 383,243 - PGA1_c03960 0.32 -1.6 383,352 + PGA1_c03960 0.39 -0.2 383,355 - PGA1_c03960 0.39 -2.5 383,367 - PGA1_c03960 0.40 +0.3 383,367 - PGA1_c03960 0.40 +0.4 383,406 + PGA1_c03960 0.42 +0.7 383,414 - PGA1_c03960 0.43 -0.1 383,476 + PGA1_c03960 0.47 +0.3 383,476 + PGA1_c03960 0.47 -0.1 383,484 - PGA1_c03960 0.47 -0.0 383,494 + PGA1_c03960 0.48 +0.8 383,502 - PGA1_c03960 0.49 +2.1 383,556 + PGA1_c03960 0.52 -0.7 383,564 + PGA1_c03960 0.53 +0.6 383,572 - PGA1_c03960 0.53 +0.4 383,631 + PGA1_c03960 0.57 -2.2 383,639 - PGA1_c03960 0.58 +0.9 383,687 + PGA1_c03960 0.61 -1.1 383,695 - PGA1_c03960 0.61 -0.4 383,695 - PGA1_c03960 0.61 +0.5 383,695 - PGA1_c03960 0.61 -0.5 383,697 + PGA1_c03960 0.61 +0.9 383,730 - PGA1_c03960 0.64 -0.4 383,733 + PGA1_c03960 0.64 +1.8 383,748 - PGA1_c03960 0.65 +0.4 383,756 - PGA1_c03960 0.65 +0.2 383,779 + PGA1_c03960 0.67 +1.2 383,814 + PGA1_c03960 0.69 -0.8 383,943 - PGA1_c03960 0.77 +0.4 383,958 - PGA1_c03960 0.78 -0.4 384,016 + PGA1_c03960 0.82 -0.2 384,024 - PGA1_c03960 0.83 +0.0 384,024 - PGA1_c03960 0.83 -0.2 384,025 - PGA1_c03960 0.83 -0.4 384,118 + PGA1_c03960 0.89 +0.4 384,126 - PGA1_c03960 0.89 -1.3 384,130 + PGA1_c03960 0.90 -0.2 384,139 + +0.2 384,157 - +1.1 384,200 + -0.4 384,208 - -0.4 384,222 - +1.1 384,228 + +0.0 384,228 + -1.1 384,229 + -0.2 384,239 + -0.4 384,239 + +0.7 384,239 + -0.2 384,239 + -1.0 384,239 + -0.2 384,239 + +1.1 384,242 - +0.4 384,247 - -0.3 384,293 - +1.2 384,303 - -0.6 384,304 - -0.8 384,325 + -0.5 384,328 - +0.2 384,472 + -0.1 384,519 + +0.7 384,525 + +0.4 384,533 - -2.5 384,572 - -0.1 384,640 + PGA1_c03970 0.15 -1.0 384,648 - PGA1_c03970 0.16 +0.3 384,648 - PGA1_c03970 0.16 +1.1 384,659 - PGA1_c03970 0.17 -0.4 384,668 - PGA1_c03970 0.18 +0.7 384,677 + PGA1_c03970 0.19 -0.2 384,685 - PGA1_c03970 0.20 -1.1 384,698 + PGA1_c03970 0.21 -1.0 384,736 + PGA1_c03970 0.25 -1.7 384,857 + PGA1_c03970 0.37 -0.3 384,890 + PGA1_c03970 0.41 -0.3 384,891 - PGA1_c03970 0.41 -0.1 384,897 + PGA1_c03970 0.41 -0.9 384,898 - PGA1_c03970 0.41 +0.5 384,898 - PGA1_c03970 0.41 +0.1 384,898 - PGA1_c03970 0.41 -0.5 384,955 + PGA1_c03970 0.47 +0.9 385,035 + PGA1_c03970 0.55 +0.4 385,048 - PGA1_c03970 0.56 +0.0 385,089 + PGA1_c03970 0.61 -2.1 385,097 - PGA1_c03970 0.61 -2.7 385,133 - PGA1_c03970 0.65 -1.2 385,133 - PGA1_c03970 0.65 +0.3 385,278 - PGA1_c03970 0.80 -1.2
Or see this region's nucleotide sequence