Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3783 and HP15_3784 are separated by 3 nucleotides HP15_3784 and HP15_3785 are separated by 225 nucleotides
HP15_3783: HP15_3783 - RimK domain protein ATP-grasp, at 4,005,200 to 4,006,024
_3783
HP15_3784: HP15_3784 - hypothetical protein, at 4,006,028 to 4,006,240
_3784
HP15_3785: HP15_3785 - ornithine decarboxylase, at 4,006,466 to 4,007,641
_3785
Position (kb)
4006
4007 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4005.097 kb on - strand at 4005.112 kb on + strand at 4005.181 kb on + strand at 4005.181 kb on + strand at 4005.181 kb on + strand at 4005.189 kb on - strand at 4005.189 kb on - strand at 4005.208 kb on - strand at 4005.208 kb on - strand at 4005.255 kb on + strand at 4005.267 kb on + strand at 4005.306 kb on - strand, within HP15_3783 at 4005.559 kb on + strand, within HP15_3783 at 4005.593 kb on + strand, within HP15_3783 at 4005.618 kb on + strand, within HP15_3783 at 4005.776 kb on - strand, within HP15_3783 at 4005.828 kb on - strand, within HP15_3783 at 4005.865 kb on + strand, within HP15_3783 at 4005.873 kb on - strand, within HP15_3783 at 4005.933 kb on - strand, within HP15_3783 at 4005.933 kb on - strand, within HP15_3783 at 4006.069 kb on + strand, within HP15_3784 at 4006.133 kb on - strand, within HP15_3784 at 4006.297 kb on + strand at 4006.350 kb on - strand at 4006.392 kb on + strand at 4006.392 kb on + strand at 4006.445 kb on - strand at 4006.450 kb on - strand at 4006.466 kb on - strand at 4006.575 kb on - strand at 4006.614 kb on - strand, within HP15_3785 at 4006.632 kb on - strand, within HP15_3785 at 4006.661 kb on + strand, within HP15_3785 at 4006.666 kb on + strand, within HP15_3785 at 4006.730 kb on - strand, within HP15_3785 at 4006.734 kb on - strand, within HP15_3785 at 4006.798 kb on + strand, within HP15_3785 at 4006.903 kb on - strand, within HP15_3785 at 4006.921 kb on + strand, within HP15_3785 at 4007.003 kb on - strand, within HP15_3785 at 4007.022 kb on - strand, within HP15_3785 at 4007.048 kb on - strand, within HP15_3785 at 4007.075 kb on + strand, within HP15_3785 at 4007.083 kb on - strand, within HP15_3785 at 4007.093 kb on - strand, within HP15_3785 at 4007.197 kb on + strand, within HP15_3785 at 4007.206 kb on - strand, within HP15_3785
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 4,005,097 - +0.4 4,005,112 + -1.3 4,005,181 + +1.2 4,005,181 + +0.0 4,005,181 + -2.2 4,005,189 - -0.2 4,005,189 - +0.6 4,005,208 - +0.1 4,005,208 - +0.7 4,005,255 + +0.0 4,005,267 + +1.1 4,005,306 - HP15_3783 0.13 -0.3 4,005,559 + HP15_3783 0.44 -1.8 4,005,593 + HP15_3783 0.48 -0.4 4,005,618 + HP15_3783 0.51 +0.2 4,005,776 - HP15_3783 0.70 -0.8 4,005,828 - HP15_3783 0.76 -0.3 4,005,865 + HP15_3783 0.81 -0.6 4,005,873 - HP15_3783 0.82 +0.8 4,005,933 - HP15_3783 0.89 -1.8 4,005,933 - HP15_3783 0.89 +0.8 4,006,069 + HP15_3784 0.19 -1.3 4,006,133 - HP15_3784 0.49 -0.4 4,006,297 + -0.7 4,006,350 - -0.9 4,006,392 + +0.6 4,006,392 + +2.3 4,006,445 - +0.3 4,006,450 - +1.1 4,006,466 - -0.5 4,006,575 - -0.4 4,006,614 - HP15_3785 0.13 -1.4 4,006,632 - HP15_3785 0.14 -0.1 4,006,661 + HP15_3785 0.17 -0.2 4,006,666 + HP15_3785 0.17 +2.9 4,006,730 - HP15_3785 0.22 +0.6 4,006,734 - HP15_3785 0.23 -0.6 4,006,798 + HP15_3785 0.28 +0.1 4,006,903 - HP15_3785 0.37 +0.2 4,006,921 + HP15_3785 0.39 +0.3 4,007,003 - HP15_3785 0.46 +0.6 4,007,022 - HP15_3785 0.47 +0.2 4,007,048 - HP15_3785 0.49 -0.5 4,007,075 + HP15_3785 0.52 +0.8 4,007,083 - HP15_3785 0.52 -1.5 4,007,093 - HP15_3785 0.53 +1.3 4,007,197 + HP15_3785 0.62 +0.3 4,007,206 - HP15_3785 0.63 -0.4
Or see this region's nucleotide sequence