Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3737 and HP15_tRNA50 are separated by 98 nucleotides HP15_tRNA50 and HP15_3738 are separated by 35 nucleotides HP15_3738 and HP15_3739 are separated by 28 nucleotides
HP15_3737: HP15_3737 - phospholipase D/transphosphatidylase, at 3,957,144 to 3,958,700
_3737
HP15_tRNA50: HP15_tRNA50 - tRNA-Pro, at 3,958,799 to 3,958,875
_tRNA50
HP15_3738: HP15_3738 - histidinol-phosphate phosphatase family protein, at 3,958,911 to 3,959,468
_3738
HP15_3739: HP15_3739 - glycyl-tRNA synthetase beta subunit, at 3,959,497 to 3,961,578
_3739
Position (kb)
3958
3959
3960 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3958.059 kb on + strand, within HP15_3737 at 3958.104 kb on + strand, within HP15_3737 at 3958.132 kb on - strand, within HP15_3737 at 3958.153 kb on - strand, within HP15_3737 at 3958.206 kb on + strand, within HP15_3737 at 3958.216 kb on - strand, within HP15_3737 at 3958.241 kb on + strand, within HP15_3737 at 3958.489 kb on + strand, within HP15_3737 at 3958.823 kb on - strand, within HP15_tRNA50 at 3958.973 kb on + strand, within HP15_3738 at 3959.040 kb on - strand, within HP15_3738 at 3959.111 kb on + strand, within HP15_3738 at 3959.119 kb on - strand, within HP15_3738 at 3959.241 kb on - strand, within HP15_3738 at 3959.282 kb on + strand, within HP15_3738 at 3959.355 kb on - strand, within HP15_3738 at 3959.379 kb on + strand, within HP15_3738 at 3959.473 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 3,958,059 + HP15_3737 0.59 +0.3 3,958,104 + HP15_3737 0.62 -2.4 3,958,132 - HP15_3737 0.63 +0.5 3,958,153 - HP15_3737 0.65 +0.2 3,958,206 + HP15_3737 0.68 -0.4 3,958,216 - HP15_3737 0.69 +0.8 3,958,241 + HP15_3737 0.70 +0.1 3,958,489 + HP15_3737 0.86 +0.4 3,958,823 - HP15_tRNA50 0.31 +0.3 3,958,973 + HP15_3738 0.11 -0.4 3,959,040 - HP15_3738 0.23 -1.2 3,959,111 + HP15_3738 0.36 -1.0 3,959,119 - HP15_3738 0.37 +0.0 3,959,241 - HP15_3738 0.59 +1.9 3,959,282 + HP15_3738 0.66 -2.0 3,959,355 - HP15_3738 0.80 -1.3 3,959,379 + HP15_3738 0.84 -0.7 3,959,473 - -1.3
Or see this region's nucleotide sequence