Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3582 and HP15_3583 overlap by 1 nucleotides HP15_3583 and HP15_3584 are separated by 5 nucleotides HP15_3584 and HP15_3585 are separated by 110 nucleotides HP15_3585 and HP15_3586 are separated by 10 nucleotides
HP15_3582: HP15_3582 - transport system permease protein, at 3,773,321 to 3,774,301
_3582
HP15_3583: HP15_3583 - iron compound ABC transporter, ATP-binding protein, at 3,774,301 to 3,775,089
_3583
HP15_3584: HP15_3584 - transcriptional regulator, LysR family protein, at 3,775,095 to 3,776,042
_3584
HP15_3585: HP15_3585 - hypothetical protein, at 3,776,153 to 3,776,260
_3585
HP15_3586: HP15_3586 - membrane protein containing DUF6, transmembrane, at 3,776,271 to 3,777,221
_3586
Position (kb)
3775
3776
3777 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3774.157 kb on + strand, within HP15_3582 at 3774.311 kb on + strand at 3774.356 kb on + strand at 3774.356 kb on + strand at 3774.470 kb on - strand, within HP15_3583 at 3774.483 kb on + strand, within HP15_3583 at 3774.491 kb on - strand, within HP15_3583 at 3774.582 kb on - strand, within HP15_3583 at 3774.765 kb on - strand, within HP15_3583 at 3774.784 kb on + strand, within HP15_3583 at 3774.827 kb on - strand, within HP15_3583 at 3774.843 kb on - strand, within HP15_3583 at 3774.886 kb on - strand, within HP15_3583 at 3774.891 kb on - strand, within HP15_3583 at 3774.904 kb on + strand, within HP15_3583 at 3774.982 kb on + strand, within HP15_3583 at 3774.992 kb on + strand, within HP15_3583 at 3774.992 kb on + strand, within HP15_3583 at 3774.992 kb on + strand, within HP15_3583 at 3774.992 kb on + strand, within HP15_3583 at 3774.992 kb on + strand, within HP15_3583 at 3774.999 kb on + strand, within HP15_3583 at 3775.000 kb on - strand, within HP15_3583 at 3775.000 kb on - strand, within HP15_3583 at 3775.017 kb on - strand at 3775.038 kb on - strand at 3775.077 kb on - strand at 3775.092 kb on - strand at 3775.294 kb on - strand, within HP15_3584 at 3775.442 kb on + strand, within HP15_3584 at 3775.514 kb on + strand, within HP15_3584 at 3775.542 kb on - strand, within HP15_3584 at 3775.654 kb on - strand, within HP15_3584 at 3775.657 kb on + strand, within HP15_3584 at 3775.660 kb on - strand, within HP15_3584 at 3775.744 kb on - strand, within HP15_3584 at 3775.769 kb on - strand, within HP15_3584 at 3775.810 kb on + strand, within HP15_3584 at 3775.882 kb on - strand, within HP15_3584 at 3775.912 kb on + strand, within HP15_3584 at 3775.981 kb on - strand at 3776.183 kb on + strand, within HP15_3585 at 3776.195 kb on - strand, within HP15_3585 at 3776.249 kb on - strand, within HP15_3585 at 3776.283 kb on + strand at 3776.482 kb on + strand, within HP15_3586 at 3776.503 kb on - strand, within HP15_3586 at 3776.516 kb on + strand, within HP15_3586 at 3776.780 kb on + strand, within HP15_3586 at 3776.926 kb on + strand, within HP15_3586 at 3776.988 kb on + strand, within HP15_3586 at 3776.988 kb on + strand, within HP15_3586 at 3776.988 kb on + strand, within HP15_3586 at 3776.996 kb on - strand, within HP15_3586 at 3776.996 kb on - strand, within HP15_3586
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 3,774,157 + HP15_3582 0.85 -2.2 3,774,311 + -0.4 3,774,356 + +0.7 3,774,356 + +1.1 3,774,470 - HP15_3583 0.21 -1.8 3,774,483 + HP15_3583 0.23 -1.5 3,774,491 - HP15_3583 0.24 -0.6 3,774,582 - HP15_3583 0.36 +0.1 3,774,765 - HP15_3583 0.59 +0.7 3,774,784 + HP15_3583 0.61 +1.4 3,774,827 - HP15_3583 0.67 -0.3 3,774,843 - HP15_3583 0.69 -3.1 3,774,886 - HP15_3583 0.74 +0.5 3,774,891 - HP15_3583 0.75 +0.4 3,774,904 + HP15_3583 0.76 +0.8 3,774,982 + HP15_3583 0.86 -0.2 3,774,992 + HP15_3583 0.88 +1.1 3,774,992 + HP15_3583 0.88 -0.1 3,774,992 + HP15_3583 0.88 +0.6 3,774,992 + HP15_3583 0.88 -2.1 3,774,992 + HP15_3583 0.88 -0.2 3,774,999 + HP15_3583 0.88 -0.8 3,775,000 - HP15_3583 0.89 -0.5 3,775,000 - HP15_3583 0.89 -0.2 3,775,017 - -0.4 3,775,038 - +0.3 3,775,077 - +1.6 3,775,092 - +0.1 3,775,294 - HP15_3584 0.21 +1.2 3,775,442 + HP15_3584 0.37 +0.2 3,775,514 + HP15_3584 0.44 +0.8 3,775,542 - HP15_3584 0.47 +0.7 3,775,654 - HP15_3584 0.59 +0.2 3,775,657 + HP15_3584 0.59 +0.0 3,775,660 - HP15_3584 0.60 +1.7 3,775,744 - HP15_3584 0.68 -0.0 3,775,769 - HP15_3584 0.71 +0.8 3,775,810 + HP15_3584 0.75 +0.7 3,775,882 - HP15_3584 0.83 +0.6 3,775,912 + HP15_3584 0.86 +0.4 3,775,981 - +0.6 3,776,183 + HP15_3585 0.28 +0.1 3,776,195 - HP15_3585 0.39 +1.1 3,776,249 - HP15_3585 0.89 -0.1 3,776,283 + -2.7 3,776,482 + HP15_3586 0.22 -0.6 3,776,503 - HP15_3586 0.24 -1.6 3,776,516 + HP15_3586 0.26 +0.1 3,776,780 + HP15_3586 0.54 +1.2 3,776,926 + HP15_3586 0.69 +0.6 3,776,988 + HP15_3586 0.75 -0.7 3,776,988 + HP15_3586 0.75 +0.1 3,776,988 + HP15_3586 0.75 -1.2 3,776,996 - HP15_3586 0.76 -2.2 3,776,996 - HP15_3586 0.76 -0.0
Or see this region's nucleotide sequence