Strain Fitness in Marinobacter adhaerens HP15 around HP15_3584

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3582 and HP15_3583 overlap by 1 nucleotidesHP15_3583 and HP15_3584 are separated by 5 nucleotidesHP15_3584 and HP15_3585 are separated by 110 nucleotidesHP15_3585 and HP15_3586 are separated by 10 nucleotides HP15_3582: HP15_3582 - transport system permease protein, at 3,773,321 to 3,774,301 _3582 HP15_3583: HP15_3583 - iron compound ABC transporter, ATP-binding protein, at 3,774,301 to 3,775,089 _3583 HP15_3584: HP15_3584 - transcriptional regulator, LysR family protein, at 3,775,095 to 3,776,042 _3584 HP15_3585: HP15_3585 - hypothetical protein, at 3,776,153 to 3,776,260 _3585 HP15_3586: HP15_3586 - membrane protein containing DUF6, transmembrane, at 3,776,271 to 3,777,221 _3586 Position (kb) 3775 3776 3777Strain fitness (log2 ratio) -3 -2 -1 0 1at 3774.157 kb on + strand, within HP15_3582at 3774.311 kb on + strandat 3774.356 kb on + strandat 3774.356 kb on + strandat 3774.470 kb on - strand, within HP15_3583at 3774.483 kb on + strand, within HP15_3583at 3774.491 kb on - strand, within HP15_3583at 3774.582 kb on - strand, within HP15_3583at 3774.765 kb on - strand, within HP15_3583at 3774.784 kb on + strand, within HP15_3583at 3774.827 kb on - strand, within HP15_3583at 3774.843 kb on - strand, within HP15_3583at 3774.886 kb on - strand, within HP15_3583at 3774.891 kb on - strand, within HP15_3583at 3774.904 kb on + strand, within HP15_3583at 3774.982 kb on + strand, within HP15_3583at 3774.992 kb on + strand, within HP15_3583at 3774.992 kb on + strand, within HP15_3583at 3774.992 kb on + strand, within HP15_3583at 3774.992 kb on + strand, within HP15_3583at 3774.992 kb on + strand, within HP15_3583at 3774.999 kb on + strand, within HP15_3583at 3775.000 kb on - strand, within HP15_3583at 3775.000 kb on - strand, within HP15_3583at 3775.017 kb on - strandat 3775.038 kb on - strandat 3775.077 kb on - strandat 3775.092 kb on - strandat 3775.294 kb on - strand, within HP15_3584at 3775.442 kb on + strand, within HP15_3584at 3775.514 kb on + strand, within HP15_3584at 3775.542 kb on - strand, within HP15_3584at 3775.654 kb on - strand, within HP15_3584at 3775.657 kb on + strand, within HP15_3584at 3775.660 kb on - strand, within HP15_3584at 3775.744 kb on - strand, within HP15_3584at 3775.769 kb on - strand, within HP15_3584at 3775.810 kb on + strand, within HP15_3584at 3775.882 kb on - strand, within HP15_3584at 3775.912 kb on + strand, within HP15_3584at 3775.981 kb on - strandat 3776.183 kb on + strand, within HP15_3585at 3776.195 kb on - strand, within HP15_3585at 3776.249 kb on - strand, within HP15_3585at 3776.283 kb on + strandat 3776.482 kb on + strand, within HP15_3586at 3776.503 kb on - strand, within HP15_3586at 3776.516 kb on + strand, within HP15_3586at 3776.780 kb on + strand, within HP15_3586at 3776.926 kb on + strand, within HP15_3586at 3776.988 kb on + strand, within HP15_3586at 3776.988 kb on + strand, within HP15_3586at 3776.988 kb on + strand, within HP15_3586at 3776.996 kb on - strand, within HP15_3586at 3776.996 kb on - strand, within HP15_3586

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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3,774,157 + HP15_3582 0.85 -2.2
3,774,311 + -0.4
3,774,356 + +0.7
3,774,356 + +1.1
3,774,470 - HP15_3583 0.21 -1.8
3,774,483 + HP15_3583 0.23 -1.5
3,774,491 - HP15_3583 0.24 -0.6
3,774,582 - HP15_3583 0.36 +0.1
3,774,765 - HP15_3583 0.59 +0.7
3,774,784 + HP15_3583 0.61 +1.4
3,774,827 - HP15_3583 0.67 -0.3
3,774,843 - HP15_3583 0.69 -3.1
3,774,886 - HP15_3583 0.74 +0.5
3,774,891 - HP15_3583 0.75 +0.4
3,774,904 + HP15_3583 0.76 +0.8
3,774,982 + HP15_3583 0.86 -0.2
3,774,992 + HP15_3583 0.88 +1.1
3,774,992 + HP15_3583 0.88 -0.1
3,774,992 + HP15_3583 0.88 +0.6
3,774,992 + HP15_3583 0.88 -2.1
3,774,992 + HP15_3583 0.88 -0.2
3,774,999 + HP15_3583 0.88 -0.8
3,775,000 - HP15_3583 0.89 -0.5
3,775,000 - HP15_3583 0.89 -0.2
3,775,017 - -0.4
3,775,038 - +0.3
3,775,077 - +1.6
3,775,092 - +0.1
3,775,294 - HP15_3584 0.21 +1.2
3,775,442 + HP15_3584 0.37 +0.2
3,775,514 + HP15_3584 0.44 +0.8
3,775,542 - HP15_3584 0.47 +0.7
3,775,654 - HP15_3584 0.59 +0.2
3,775,657 + HP15_3584 0.59 +0.0
3,775,660 - HP15_3584 0.60 +1.7
3,775,744 - HP15_3584 0.68 -0.0
3,775,769 - HP15_3584 0.71 +0.8
3,775,810 + HP15_3584 0.75 +0.7
3,775,882 - HP15_3584 0.83 +0.6
3,775,912 + HP15_3584 0.86 +0.4
3,775,981 - +0.6
3,776,183 + HP15_3585 0.28 +0.1
3,776,195 - HP15_3585 0.39 +1.1
3,776,249 - HP15_3585 0.89 -0.1
3,776,283 + -2.7
3,776,482 + HP15_3586 0.22 -0.6
3,776,503 - HP15_3586 0.24 -1.6
3,776,516 + HP15_3586 0.26 +0.1
3,776,780 + HP15_3586 0.54 +1.2
3,776,926 + HP15_3586 0.69 +0.6
3,776,988 + HP15_3586 0.75 -0.7
3,776,988 + HP15_3586 0.75 +0.1
3,776,988 + HP15_3586 0.75 -1.2
3,776,996 - HP15_3586 0.76 -2.2
3,776,996 - HP15_3586 0.76 -0.0

Or see this region's nucleotide sequence