Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3506 and HP15_3507 overlap by 4 nucleotides HP15_3507 and HP15_3508 are separated by 57 nucleotides HP15_3508 and HP15_3509 are separated by 7 nucleotides HP15_3509 and HP15_3510 are separated by 19 nucleotides
HP15_3506: HP15_3506 - dihydroorotase, multifunctional complex type, at 3,690,072 to 3,691,376
_3506
HP15_3507: HP15_3507 - aspartate carbamoyltransferase, at 3,691,373 to 3,692,356
_3507
HP15_3508: HP15_3508 - bifunctional protein PyrR, at 3,692,414 to 3,692,923
_3508
HP15_3509: HP15_3509 - Holliday junction resolvase, at 3,692,931 to 3,693,326
_3509
HP15_3510: HP15_3510 - transcriptional regulator, at 3,693,346 to 3,693,882
_3510
Position (kb)
3691
3692
3693 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3690.425 kb on - strand, within HP15_3506 at 3690.470 kb on - strand, within HP15_3506 at 3690.752 kb on + strand, within HP15_3506 at 3690.837 kb on + strand, within HP15_3506 at 3691.281 kb on - strand at 3691.291 kb on + strand at 3691.359 kb on - strand at 3691.371 kb on + strand at 3691.371 kb on + strand at 3691.371 kb on + strand at 3691.371 kb on + strand at 3691.379 kb on - strand at 3691.379 kb on - strand at 3691.838 kb on + strand, within HP15_3507 at 3692.178 kb on - strand, within HP15_3507 at 3692.254 kb on + strand, within HP15_3507 at 3692.358 kb on - strand at 3692.449 kb on + strand at 3692.457 kb on - strand at 3692.568 kb on - strand, within HP15_3508 at 3692.568 kb on - strand, within HP15_3508 at 3692.635 kb on - strand, within HP15_3508 at 3692.683 kb on - strand, within HP15_3508 at 3692.683 kb on - strand, within HP15_3508 at 3692.739 kb on + strand, within HP15_3508 at 3692.778 kb on + strand, within HP15_3508 at 3692.825 kb on + strand, within HP15_3508 at 3692.838 kb on - strand, within HP15_3508 at 3692.916 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 3,690,425 - HP15_3506 0.27 -3.1 3,690,470 - HP15_3506 0.30 -3.4 3,690,752 + HP15_3506 0.52 -0.6 3,690,837 + HP15_3506 0.59 -2.8 3,691,281 - -2.4 3,691,291 + -0.6 3,691,359 - -0.3 3,691,371 + -2.3 3,691,371 + -4.1 3,691,371 + -1.9 3,691,371 + -5.3 3,691,379 - -0.3 3,691,379 - -0.3 3,691,838 + HP15_3507 0.47 -3.4 3,692,178 - HP15_3507 0.82 -2.2 3,692,254 + HP15_3507 0.90 -1.2 3,692,358 - -2.0 3,692,449 + +0.6 3,692,457 - +0.2 3,692,568 - HP15_3508 0.30 +0.8 3,692,568 - HP15_3508 0.30 +0.8 3,692,635 - HP15_3508 0.43 +0.4 3,692,683 - HP15_3508 0.53 +0.0 3,692,683 - HP15_3508 0.53 -0.7 3,692,739 + HP15_3508 0.64 -0.6 3,692,778 + HP15_3508 0.71 +0.0 3,692,825 + HP15_3508 0.81 -0.3 3,692,838 - HP15_3508 0.83 -1.0 3,692,916 + +0.4
Or see this region's nucleotide sequence