Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3372 and HP15_3373 are separated by 170 nucleotides HP15_3373 and HP15_3374 are separated by 239 nucleotides HP15_3374 and HP15_3375 are separated by 17 nucleotides
HP15_3372: HP15_3372 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 3,539,016 to 3,539,711
_3372
HP15_3373: HP15_3373 - cold shock, CspA, at 3,539,882 to 3,540,088
_3373
HP15_3374: HP15_3374 - protein CrcB-like protein, at 3,540,328 to 3,540,708
_3374
HP15_3375: HP15_3375 - acyl-coenzyme A dehydrogenase, at 3,540,726 to 3,543,176
_3375
Position (kb)
3540
3541 Strain fitness (log2 ratio)
-2
-1
0
1 at 3539.383 kb on + strand, within HP15_3372 at 3539.438 kb on + strand, within HP15_3372 at 3539.580 kb on + strand, within HP15_3372 at 3539.674 kb on - strand at 3539.674 kb on - strand at 3539.692 kb on + strand at 3539.692 kb on + strand at 3539.692 kb on + strand at 3539.918 kb on - strand, within HP15_3373 at 3540.146 kb on + strand at 3540.197 kb on + strand at 3540.375 kb on + strand, within HP15_3374 at 3540.402 kb on - strand, within HP15_3374 at 3540.575 kb on + strand, within HP15_3374 at 3540.703 kb on + strand at 3540.708 kb on + strand at 3540.867 kb on + strand at 3540.885 kb on - strand at 3540.969 kb on + strand at 3540.969 kb on + strand at 3540.977 kb on - strand, within HP15_3375 at 3541.346 kb on + strand, within HP15_3375 at 3541.415 kb on + strand, within HP15_3375 at 3541.416 kb on + strand, within HP15_3375 at 3541.673 kb on - strand, within HP15_3375 at 3541.690 kb on - strand, within HP15_3375 at 3541.690 kb on - strand, within HP15_3375 at 3541.700 kb on - strand, within HP15_3375
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 3,539,383 + HP15_3372 0.53 +1.4 3,539,438 + HP15_3372 0.61 -1.0 3,539,580 + HP15_3372 0.81 -1.7 3,539,674 - +0.6 3,539,674 - +0.6 3,539,692 + -1.4 3,539,692 + +1.4 3,539,692 + +0.0 3,539,918 - HP15_3373 0.17 -1.4 3,540,146 + +0.4 3,540,197 + -1.2 3,540,375 + HP15_3374 0.12 -1.1 3,540,402 - HP15_3374 0.19 -0.2 3,540,575 + HP15_3374 0.65 -1.2 3,540,703 + -0.4 3,540,708 + +0.6 3,540,867 + -0.0 3,540,885 - -0.2 3,540,969 + +0.1 3,540,969 + -0.1 3,540,977 - HP15_3375 0.10 +0.4 3,541,346 + HP15_3375 0.25 -2.3 3,541,415 + HP15_3375 0.28 +1.1 3,541,416 + HP15_3375 0.28 -0.2 3,541,673 - HP15_3375 0.39 +0.4 3,541,690 - HP15_3375 0.39 -0.5 3,541,690 - HP15_3375 0.39 -0.9 3,541,700 - HP15_3375 0.40 -1.0
Or see this region's nucleotide sequence