Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3342 and HP15_3343 are separated by 173 nucleotides HP15_3343 and HP15_3344 are separated by 89 nucleotides
HP15_3342: HP15_3342 - pyridoxal-dependent decarboxylase, at 3,502,851 to 3,504,527
_3342
HP15_3343: HP15_3343 - conserved hypothetical protein, at 3,504,701 to 3,504,967
_3343
HP15_3344: HP15_3344 - phosphate transporter family protein, at 3,505,057 to 3,506,616
_3344
Position (kb)
3504
3505 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3504.523 kb on + strand at 3504.530 kb on - strand at 3504.645 kb on + strand at 3504.696 kb on - strand at 3504.894 kb on + strand, within HP15_3343 at 3504.989 kb on + strand at 3504.989 kb on + strand at 3505.121 kb on - strand at 3505.208 kb on + strand at 3505.208 kb on + strand at 3505.216 kb on - strand, within HP15_3344 at 3505.216 kb on - strand, within HP15_3344 at 3505.216 kb on - strand, within HP15_3344 at 3505.343 kb on + strand, within HP15_3344 at 3505.432 kb on + strand, within HP15_3344 at 3505.457 kb on + strand, within HP15_3344 at 3505.490 kb on + strand, within HP15_3344 at 3505.504 kb on + strand, within HP15_3344 at 3505.507 kb on - strand, within HP15_3344 at 3505.507 kb on - strand, within HP15_3344 at 3505.548 kb on + strand, within HP15_3344 at 3505.575 kb on + strand, within HP15_3344 at 3505.589 kb on - strand, within HP15_3344 at 3505.674 kb on + strand, within HP15_3344 at 3505.712 kb on + strand, within HP15_3344 at 3505.747 kb on + strand, within HP15_3344 at 3505.817 kb on - strand, within HP15_3344 at 3505.898 kb on + strand, within HP15_3344
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 3,504,523 + +0.8 3,504,530 - -3.5 3,504,645 + -0.3 3,504,696 - +0.3 3,504,894 + HP15_3343 0.72 -1.2 3,504,989 + -0.1 3,504,989 + -1.6 3,505,121 - +2.7 3,505,208 + -0.0 3,505,208 + -1.0 3,505,216 - HP15_3344 0.10 -0.2 3,505,216 - HP15_3344 0.10 -1.6 3,505,216 - HP15_3344 0.10 -0.0 3,505,343 + HP15_3344 0.18 +0.2 3,505,432 + HP15_3344 0.24 -0.5 3,505,457 + HP15_3344 0.26 -1.3 3,505,490 + HP15_3344 0.28 -0.8 3,505,504 + HP15_3344 0.29 -1.8 3,505,507 - HP15_3344 0.29 +0.4 3,505,507 - HP15_3344 0.29 +0.5 3,505,548 + HP15_3344 0.31 +0.4 3,505,575 + HP15_3344 0.33 +1.8 3,505,589 - HP15_3344 0.34 +0.4 3,505,674 + HP15_3344 0.40 -0.6 3,505,712 + HP15_3344 0.42 -0.6 3,505,747 + HP15_3344 0.44 -1.1 3,505,817 - HP15_3344 0.49 -0.3 3,505,898 + HP15_3344 0.54 -0.4
Or see this region's nucleotide sequence