Experiment: m.b. Furfuryl Alcohol 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03490 and PGA1_c03500 are separated by 218 nucleotides PGA1_c03500 and PGA1_c03510 overlap by 4 nucleotides PGA1_c03510 and PGA1_c03520 overlap by 4 nucleotides PGA1_c03520 and PGA1_c03530 overlap by 23 nucleotides
PGA1_c03490: PGA1_c03490 - hypothetical protein, at 336,893 to 337,774
_c03490
PGA1_c03500: PGA1_c03500 - putative cell division ATP-binding protein FtsE, at 337,993 to 338,670
_c03500
PGA1_c03510: PGA1_c03510 - protein insertion permease FtsX-like protein, at 338,667 to 339,566
_c03510
PGA1_c03520: PGA1_c03520 - putative acyltransferase, at 339,563 to 340,312
_c03520
PGA1_c03530: PGA1_c03530 - pyridoxamine 5'-phosphate oxidase-like protein, at 340,290 to 340,895
_c03530
Position (kb) 338
339
340 Strain fitness (log2 ratio) -2
-1
0
1
2 at 337.719 kb on - strand at 337.776 kb on + strand at 337.783 kb on - strand at 337.876 kb on + strand at 337.893 kb on + strand at 337.893 kb on + strand at 337.901 kb on - strand at 337.901 kb on - strand at 337.914 kb on + strand at 337.922 kb on - strand at 337.928 kb on - strand at 337.937 kb on + strand at 338.043 kb on - strand at 338.097 kb on + strand, within PGA1_c03500 at 338.268 kb on + strand, within PGA1_c03500 at 338.295 kb on + strand, within PGA1_c03500 at 338.309 kb on - strand, within PGA1_c03500 at 338.570 kb on + strand, within PGA1_c03500 at 338.589 kb on - strand, within PGA1_c03500 at 338.594 kb on - strand, within PGA1_c03500 at 338.594 kb on - strand, within PGA1_c03500 at 338.613 kb on + strand at 338.613 kb on + strand at 338.652 kb on + strand at 338.652 kb on + strand at 338.676 kb on + strand at 338.711 kb on + strand at 338.855 kb on - strand, within PGA1_c03510 at 338.909 kb on - strand, within PGA1_c03510 at 338.909 kb on - strand, within PGA1_c03510 at 338.909 kb on - strand, within PGA1_c03510 at 338.909 kb on - strand, within PGA1_c03510 at 338.909 kb on - strand, within PGA1_c03510 at 338.988 kb on - strand, within PGA1_c03510 at 339.056 kb on + strand, within PGA1_c03510 at 339.143 kb on - strand, within PGA1_c03510 at 339.156 kb on + strand, within PGA1_c03510 at 339.164 kb on - strand, within PGA1_c03510 at 339.164 kb on - strand, within PGA1_c03510 at 339.332 kb on - strand, within PGA1_c03510 at 339.339 kb on - strand, within PGA1_c03510 at 339.362 kb on + strand, within PGA1_c03510 at 339.375 kb on - strand, within PGA1_c03510 at 339.387 kb on - strand, within PGA1_c03510 at 339.395 kb on + strand, within PGA1_c03510 at 339.485 kb on + strand at 340.279 kb on - strand at 340.336 kb on + strand at 340.344 kb on - strand at 340.355 kb on + strand, within PGA1_c03530 at 340.363 kb on - strand, within PGA1_c03530 at 340.432 kb on - strand, within PGA1_c03530 at 340.437 kb on - strand, within PGA1_c03530 at 340.504 kb on + strand, within PGA1_c03530 at 340.504 kb on + strand, within PGA1_c03530 at 340.504 kb on + strand, within PGA1_c03530 at 340.512 kb on - strand, within PGA1_c03530 at 340.512 kb on - strand, within PGA1_c03530 at 340.512 kb on - strand, within PGA1_c03530
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.032 vol% remove 337,719 - -0.6 337,776 + -0.8 337,783 - +1.0 337,876 + +1.0 337,893 + +0.1 337,893 + +2.0 337,901 - +2.7 337,901 - -0.1 337,914 + -0.5 337,922 - +0.4 337,928 - -1.8 337,937 + +1.3 338,043 - -1.4 338,097 + PGA1_c03500 0.15 -0.8 338,268 + PGA1_c03500 0.41 -1.8 338,295 + PGA1_c03500 0.45 -0.4 338,309 - PGA1_c03500 0.47 -0.5 338,570 + PGA1_c03500 0.85 -0.3 338,589 - PGA1_c03500 0.88 -1.4 338,594 - PGA1_c03500 0.89 +0.4 338,594 - PGA1_c03500 0.89 +1.0 338,613 + -0.0 338,613 + +1.0 338,652 + -0.0 338,652 + +0.5 338,676 + +0.0 338,711 + -1.6 338,855 - PGA1_c03510 0.21 -2.4 338,909 - PGA1_c03510 0.27 +1.0 338,909 - PGA1_c03510 0.27 -0.8 338,909 - PGA1_c03510 0.27 -0.0 338,909 - PGA1_c03510 0.27 +0.7 338,909 - PGA1_c03510 0.27 -0.0 338,988 - PGA1_c03510 0.36 -1.0 339,056 + PGA1_c03510 0.43 -0.6 339,143 - PGA1_c03510 0.53 -0.3 339,156 + PGA1_c03510 0.54 +1.0 339,164 - PGA1_c03510 0.55 -0.5 339,164 - PGA1_c03510 0.55 +0.6 339,332 - PGA1_c03510 0.74 -1.2 339,339 - PGA1_c03510 0.75 -1.2 339,362 + PGA1_c03510 0.77 +1.0 339,375 - PGA1_c03510 0.79 +1.0 339,387 - PGA1_c03510 0.80 -0.0 339,395 + PGA1_c03510 0.81 +0.4 339,485 + +0.3 340,279 - +0.3 340,336 + -2.0 340,344 - +0.2 340,355 + PGA1_c03530 0.11 +0.3 340,363 - PGA1_c03530 0.12 +1.3 340,432 - PGA1_c03530 0.23 -1.0 340,437 - PGA1_c03530 0.24 +1.0 340,504 + PGA1_c03530 0.35 +0.4 340,504 + PGA1_c03530 0.35 -0.3 340,504 + PGA1_c03530 0.35 +1.8 340,512 - PGA1_c03530 0.37 -0.3 340,512 - PGA1_c03530 0.37 +1.0 340,512 - PGA1_c03530 0.37 -0.2
Or see this region's nucleotide sequence