Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2977 and HP15_2978 are separated by 1 nucleotides HP15_2978 and HP15_2979 are separated by 134 nucleotides
HP15_2977: HP15_2977 - ion transport protein, at 3,120,710 to 3,121,531
_2977
HP15_2978: HP15_2978 - invasion gene expression up-regulator, SirB, at 3,121,533 to 3,121,892
_2978
HP15_2979: HP15_2979 - NnrS family protein, at 3,122,027 to 3,123,211
_2979
Position (kb)
3121
3122 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3120.550 kb on - strand at 3120.606 kb on + strand at 3120.606 kb on + strand at 3120.773 kb on + strand at 3120.788 kb on + strand at 3120.807 kb on + strand, within HP15_2977 at 3121.041 kb on - strand, within HP15_2977 at 3121.069 kb on - strand, within HP15_2977 at 3121.136 kb on + strand, within HP15_2977 at 3121.263 kb on - strand, within HP15_2977 at 3121.277 kb on - strand, within HP15_2977 at 3121.286 kb on + strand, within HP15_2977 at 3121.321 kb on + strand, within HP15_2977 at 3121.329 kb on - strand, within HP15_2977 at 3121.407 kb on - strand, within HP15_2977 at 3121.429 kb on + strand, within HP15_2977 at 3121.471 kb on + strand at 3121.824 kb on + strand, within HP15_2978 at 3121.960 kb on + strand at 3121.962 kb on + strand at 3122.040 kb on - strand at 3122.128 kb on - strand at 3122.129 kb on - strand at 3122.143 kb on + strand at 3122.144 kb on - strand at 3122.148 kb on + strand, within HP15_2979 at 3122.183 kb on - strand, within HP15_2979 at 3122.281 kb on + strand, within HP15_2979 at 3122.289 kb on - strand, within HP15_2979 at 3122.314 kb on + strand, within HP15_2979 at 3122.320 kb on + strand, within HP15_2979 at 3122.320 kb on + strand, within HP15_2979 at 3122.320 kb on + strand, within HP15_2979 at 3122.320 kb on + strand, within HP15_2979 at 3122.320 kb on + strand, within HP15_2979 at 3122.320 kb on + strand, within HP15_2979 at 3122.320 kb on + strand, within HP15_2979 at 3122.328 kb on - strand, within HP15_2979 at 3122.328 kb on - strand, within HP15_2979 at 3122.328 kb on - strand, within HP15_2979 at 3122.328 kb on - strand, within HP15_2979 at 3122.328 kb on - strand, within HP15_2979 at 3122.343 kb on + strand, within HP15_2979 at 3122.351 kb on - strand, within HP15_2979 at 3122.394 kb on - strand, within HP15_2979 at 3122.505 kb on - strand, within HP15_2979 at 3122.548 kb on - strand, within HP15_2979 at 3122.548 kb on - strand, within HP15_2979 at 3122.560 kb on + strand, within HP15_2979 at 3122.560 kb on + strand, within HP15_2979 at 3122.561 kb on - strand, within HP15_2979 at 3122.568 kb on - strand, within HP15_2979 at 3122.568 kb on - strand, within HP15_2979 at 3122.578 kb on + strand, within HP15_2979 at 3122.581 kb on - strand, within HP15_2979 at 3122.581 kb on - strand, within HP15_2979 at 3122.586 kb on - strand, within HP15_2979 at 3122.611 kb on + strand, within HP15_2979 at 3122.625 kb on + strand, within HP15_2979 at 3122.657 kb on + strand, within HP15_2979 at 3122.670 kb on - strand, within HP15_2979 at 3122.687 kb on + strand, within HP15_2979 at 3122.715 kb on + strand, within HP15_2979 at 3122.767 kb on - strand, within HP15_2979 at 3122.848 kb on + strand, within HP15_2979
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 3,120,550 - +0.4 3,120,606 + -0.8 3,120,606 + -0.1 3,120,773 + -1.9 3,120,788 + -0.8 3,120,807 + HP15_2977 0.12 -0.2 3,121,041 - HP15_2977 0.40 +0.0 3,121,069 - HP15_2977 0.44 -1.0 3,121,136 + HP15_2977 0.52 -0.5 3,121,263 - HP15_2977 0.67 +0.4 3,121,277 - HP15_2977 0.69 +0.1 3,121,286 + HP15_2977 0.70 -2.3 3,121,321 + HP15_2977 0.74 -0.3 3,121,329 - HP15_2977 0.75 -1.6 3,121,407 - HP15_2977 0.85 +0.4 3,121,429 + HP15_2977 0.87 -0.8 3,121,471 + -0.9 3,121,824 + HP15_2978 0.81 -0.9 3,121,960 + -1.0 3,121,962 + -0.6 3,122,040 - -2.3 3,122,128 - -1.0 3,122,129 - -0.6 3,122,143 + -0.1 3,122,144 - -0.6 3,122,148 + HP15_2979 0.10 -0.3 3,122,183 - HP15_2979 0.13 +0.7 3,122,281 + HP15_2979 0.21 -1.0 3,122,289 - HP15_2979 0.22 -0.0 3,122,314 + HP15_2979 0.24 -0.4 3,122,320 + HP15_2979 0.25 -0.2 3,122,320 + HP15_2979 0.25 -0.4 3,122,320 + HP15_2979 0.25 +0.4 3,122,320 + HP15_2979 0.25 +0.2 3,122,320 + HP15_2979 0.25 -2.1 3,122,320 + HP15_2979 0.25 -1.1 3,122,320 + HP15_2979 0.25 -1.5 3,122,328 - HP15_2979 0.25 -0.2 3,122,328 - HP15_2979 0.25 -0.2 3,122,328 - HP15_2979 0.25 -0.3 3,122,328 - HP15_2979 0.25 +1.1 3,122,328 - HP15_2979 0.25 -2.0 3,122,343 + HP15_2979 0.27 +0.2 3,122,351 - HP15_2979 0.27 -0.8 3,122,394 - HP15_2979 0.31 +0.1 3,122,505 - HP15_2979 0.40 -0.2 3,122,548 - HP15_2979 0.44 +0.5 3,122,548 - HP15_2979 0.44 +0.8 3,122,560 + HP15_2979 0.45 -1.6 3,122,560 + HP15_2979 0.45 -3.1 3,122,561 - HP15_2979 0.45 -0.6 3,122,568 - HP15_2979 0.46 -0.1 3,122,568 - HP15_2979 0.46 +2.2 3,122,578 + HP15_2979 0.46 -0.3 3,122,581 - HP15_2979 0.47 -0.6 3,122,581 - HP15_2979 0.47 -0.3 3,122,586 - HP15_2979 0.47 +0.2 3,122,611 + HP15_2979 0.49 -1.3 3,122,625 + HP15_2979 0.50 -1.1 3,122,657 + HP15_2979 0.53 +1.2 3,122,670 - HP15_2979 0.54 +0.5 3,122,687 + HP15_2979 0.56 +0.5 3,122,715 + HP15_2979 0.58 +0.2 3,122,767 - HP15_2979 0.62 -0.4 3,122,848 + HP15_2979 0.69 +0.1
Or see this region's nucleotide sequence