Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2971 and HP15_2972 are separated by 215 nucleotides HP15_2972 and HP15_2973 are separated by 98 nucleotides HP15_2973 and HP15_2974 are separated by 166 nucleotides
HP15_2971: HP15_2971 - auxin efflux carrier, at 3,115,237 to 3,116,154
_2971
HP15_2972: HP15_2972 - cyclic nucleotide-binding protein, at 3,116,370 to 3,117,029
_2972
HP15_2973: HP15_2973 - flavoprotein wrbA, at 3,117,128 to 3,117,727
_2973
HP15_2974: HP15_2974 - channel protein, hemolysin III family, at 3,117,894 to 3,118,595
_2974
Position (kb)
3116
3117
3118 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3115.406 kb on + strand, within HP15_2971 at 3115.406 kb on + strand, within HP15_2971 at 3115.425 kb on - strand, within HP15_2971 at 3115.447 kb on - strand, within HP15_2971 at 3115.463 kb on + strand, within HP15_2971 at 3115.466 kb on - strand, within HP15_2971 at 3115.570 kb on + strand, within HP15_2971 at 3115.660 kb on + strand, within HP15_2971 at 3115.668 kb on - strand, within HP15_2971 at 3115.721 kb on + strand, within HP15_2971 at 3115.758 kb on + strand, within HP15_2971 at 3115.766 kb on - strand, within HP15_2971 at 3115.821 kb on - strand, within HP15_2971 at 3115.864 kb on - strand, within HP15_2971 at 3115.960 kb on + strand, within HP15_2971 at 3116.060 kb on + strand, within HP15_2971 at 3116.160 kb on - strand at 3116.173 kb on + strand at 3116.291 kb on + strand at 3116.352 kb on - strand at 3116.403 kb on - strand at 3116.578 kb on + strand, within HP15_2972 at 3116.802 kb on + strand, within HP15_2972 at 3116.936 kb on + strand, within HP15_2972 at 3116.977 kb on + strand at 3117.022 kb on + strand at 3117.042 kb on + strand at 3117.265 kb on + strand, within HP15_2973 at 3117.489 kb on + strand, within HP15_2973 at 3117.537 kb on + strand, within HP15_2973 at 3117.654 kb on - strand, within HP15_2973 at 3117.668 kb on - strand at 3117.728 kb on + strand at 3117.775 kb on + strand at 3117.858 kb on + strand at 3117.947 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 3,115,406 + HP15_2971 0.18 +1.4 3,115,406 + HP15_2971 0.18 -0.1 3,115,425 - HP15_2971 0.20 +2.2 3,115,447 - HP15_2971 0.23 +0.1 3,115,463 + HP15_2971 0.25 +0.9 3,115,466 - HP15_2971 0.25 -0.2 3,115,570 + HP15_2971 0.36 +1.2 3,115,660 + HP15_2971 0.46 +2.6 3,115,668 - HP15_2971 0.47 +0.3 3,115,721 + HP15_2971 0.53 +0.3 3,115,758 + HP15_2971 0.57 +0.4 3,115,766 - HP15_2971 0.58 -0.3 3,115,821 - HP15_2971 0.64 -0.2 3,115,864 - HP15_2971 0.68 +1.4 3,115,960 + HP15_2971 0.79 -0.1 3,116,060 + HP15_2971 0.90 +0.2 3,116,160 - -0.8 3,116,173 + +0.2 3,116,291 + -1.2 3,116,352 - -0.2 3,116,403 - +0.8 3,116,578 + HP15_2972 0.32 -2.1 3,116,802 + HP15_2972 0.65 +1.6 3,116,936 + HP15_2972 0.86 -0.8 3,116,977 + -0.3 3,117,022 + +1.3 3,117,042 + +1.2 3,117,265 + HP15_2973 0.23 +2.2 3,117,489 + HP15_2973 0.60 -0.2 3,117,537 + HP15_2973 0.68 -0.4 3,117,654 - HP15_2973 0.88 -2.3 3,117,668 - +0.4 3,117,728 + -0.9 3,117,775 + +1.2 3,117,858 + +0.3 3,117,947 - -1.0
Or see this region's nucleotide sequence