Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2959 and HP15_2960 are separated by 110 nucleotides HP15_2960 and HP15_2961 overlap by 14 nucleotides HP15_2961 and HP15_2962 are separated by 96 nucleotides
HP15_2959: HP15_2959 - porin, LamB type, at 3,102,908 to 3,104,356
_2959
HP15_2960: HP15_2960 - two-component sensor, at 3,104,467 to 3,105,933
_2960
HP15_2961: HP15_2961 - two component transcriptional regulator, winged helix family, at 3,105,920 to 3,106,660
_2961
HP15_2962: HP15_2962 - conserved hypothetical protein, secreted, at 3,106,757 to 3,108,001
_2962
Position (kb)
3104
3105
3106 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3103.486 kb on - strand, within HP15_2959 at 3103.787 kb on + strand, within HP15_2959 at 3103.787 kb on + strand, within HP15_2959 at 3103.795 kb on - strand, within HP15_2959 at 3103.795 kb on - strand, within HP15_2959 at 3103.810 kb on + strand, within HP15_2959 at 3103.888 kb on + strand, within HP15_2959 at 3103.889 kb on + strand, within HP15_2959 at 3103.949 kb on - strand, within HP15_2959 at 3104.082 kb on - strand, within HP15_2959 at 3104.082 kb on - strand, within HP15_2959 at 3104.082 kb on - strand, within HP15_2959 at 3104.096 kb on - strand, within HP15_2959 at 3104.160 kb on + strand, within HP15_2959 at 3104.161 kb on - strand, within HP15_2959 at 3104.196 kb on - strand, within HP15_2959 at 3104.203 kb on + strand, within HP15_2959 at 3104.231 kb on - strand at 3104.327 kb on - strand at 3104.509 kb on - strand at 3104.562 kb on - strand at 3104.653 kb on + strand, within HP15_2960 at 3104.708 kb on - strand, within HP15_2960 at 3104.751 kb on - strand, within HP15_2960 at 3104.831 kb on - strand, within HP15_2960 at 3104.929 kb on - strand, within HP15_2960 at 3105.035 kb on + strand, within HP15_2960 at 3105.118 kb on - strand, within HP15_2960 at 3105.124 kb on + strand, within HP15_2960 at 3105.351 kb on + strand, within HP15_2960 at 3105.371 kb on - strand, within HP15_2960 at 3105.407 kb on - strand, within HP15_2960 at 3105.417 kb on + strand, within HP15_2960 at 3105.429 kb on + strand, within HP15_2960 at 3105.448 kb on - strand, within HP15_2960 at 3105.469 kb on - strand, within HP15_2960 at 3105.542 kb on + strand, within HP15_2960 at 3105.542 kb on + strand, within HP15_2960 at 3105.542 kb on + strand, within HP15_2960 at 3105.863 kb on - strand at 3105.975 kb on + strand at 3105.983 kb on - strand at 3105.999 kb on - strand, within HP15_2961 at 3106.006 kb on - strand, within HP15_2961 at 3106.084 kb on + strand, within HP15_2961 at 3106.097 kb on - strand, within HP15_2961 at 3106.103 kb on + strand, within HP15_2961 at 3106.125 kb on + strand, within HP15_2961 at 3106.155 kb on + strand, within HP15_2961 at 3106.168 kb on - strand, within HP15_2961 at 3106.264 kb on + strand, within HP15_2961 at 3106.272 kb on - strand, within HP15_2961 at 3106.303 kb on - strand, within HP15_2961 at 3106.313 kb on + strand, within HP15_2961 at 3106.344 kb on + strand, within HP15_2961 at 3106.462 kb on + strand, within HP15_2961 at 3106.544 kb on - strand, within HP15_2961 at 3106.567 kb on - strand, within HP15_2961 at 3106.637 kb on + strand at 3106.726 kb on - strand at 3106.834 kb on + strand at 3106.835 kb on + strand at 3106.842 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 3,103,486 - HP15_2959 0.40 -0.2 3,103,787 + HP15_2959 0.61 +1.8 3,103,787 + HP15_2959 0.61 -0.0 3,103,795 - HP15_2959 0.61 +0.2 3,103,795 - HP15_2959 0.61 -1.4 3,103,810 + HP15_2959 0.62 -0.6 3,103,888 + HP15_2959 0.68 -1.8 3,103,889 + HP15_2959 0.68 -0.0 3,103,949 - HP15_2959 0.72 +0.4 3,104,082 - HP15_2959 0.81 +1.5 3,104,082 - HP15_2959 0.81 -0.3 3,104,082 - HP15_2959 0.81 +1.6 3,104,096 - HP15_2959 0.82 -0.6 3,104,160 + HP15_2959 0.86 -0.9 3,104,161 - HP15_2959 0.86 -0.2 3,104,196 - HP15_2959 0.89 +1.0 3,104,203 + HP15_2959 0.89 -0.3 3,104,231 - +0.8 3,104,327 - +1.1 3,104,509 - +1.5 3,104,562 - -0.7 3,104,653 + HP15_2960 0.13 +1.1 3,104,708 - HP15_2960 0.16 -0.4 3,104,751 - HP15_2960 0.19 +0.3 3,104,831 - HP15_2960 0.25 -1.6 3,104,929 - HP15_2960 0.31 +1.4 3,105,035 + HP15_2960 0.39 +2.3 3,105,118 - HP15_2960 0.44 +0.2 3,105,124 + HP15_2960 0.45 -0.1 3,105,351 + HP15_2960 0.60 +0.1 3,105,371 - HP15_2960 0.62 +0.2 3,105,407 - HP15_2960 0.64 +0.3 3,105,417 + HP15_2960 0.65 -0.5 3,105,429 + HP15_2960 0.66 -0.1 3,105,448 - HP15_2960 0.67 +0.1 3,105,469 - HP15_2960 0.68 -0.6 3,105,542 + HP15_2960 0.73 +0.3 3,105,542 + HP15_2960 0.73 -0.5 3,105,542 + HP15_2960 0.73 -0.6 3,105,863 - -1.3 3,105,975 + -0.3 3,105,983 - -1.8 3,105,999 - HP15_2961 0.11 -0.7 3,106,006 - HP15_2961 0.12 +3.2 3,106,084 + HP15_2961 0.22 -0.8 3,106,097 - HP15_2961 0.24 -0.8 3,106,103 + HP15_2961 0.25 -1.2 3,106,125 + HP15_2961 0.28 +1.1 3,106,155 + HP15_2961 0.32 -0.0 3,106,168 - HP15_2961 0.33 +0.7 3,106,264 + HP15_2961 0.46 -0.8 3,106,272 - HP15_2961 0.48 +1.0 3,106,303 - HP15_2961 0.52 -0.4 3,106,313 + HP15_2961 0.53 -2.2 3,106,344 + HP15_2961 0.57 -0.4 3,106,462 + HP15_2961 0.73 +0.4 3,106,544 - HP15_2961 0.84 +0.2 3,106,567 - HP15_2961 0.87 -0.6 3,106,637 + -0.1 3,106,726 - -2.0 3,106,834 + -0.3 3,106,835 + +1.0 3,106,842 - +0.8
Or see this region's nucleotide sequence