Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2893 and HP15_2894 are separated by 252 nucleotides HP15_2894 and HP15_2895 are separated by 65 nucleotides
HP15_2893: HP15_2893 - transcriptional regulator, GntR family, at 3,028,542 to 3,029,201
_2893
HP15_2894: HP15_2894 - conserved hypothetical protein, at 3,029,454 to 3,030,419
_2894
HP15_2895: HP15_2895 - integral membrane protein, at 3,030,485 to 3,031,543
_2895
Position (kb)
3029
3030
3031 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3028.454 kb on - strand at 3028.464 kb on - strand at 3028.486 kb on - strand at 3028.517 kb on + strand at 3028.601 kb on + strand at 3028.685 kb on + strand, within HP15_2893 at 3028.692 kb on + strand, within HP15_2893 at 3028.700 kb on - strand, within HP15_2893 at 3028.700 kb on - strand, within HP15_2893 at 3028.700 kb on - strand, within HP15_2893 at 3028.700 kb on - strand, within HP15_2893 at 3028.702 kb on + strand, within HP15_2893 at 3028.702 kb on + strand, within HP15_2893 at 3028.710 kb on - strand, within HP15_2893 at 3028.736 kb on + strand, within HP15_2893 at 3028.792 kb on - strand, within HP15_2893 at 3028.868 kb on - strand, within HP15_2893 at 3028.893 kb on - strand, within HP15_2893 at 3028.895 kb on - strand, within HP15_2893 at 3028.895 kb on - strand, within HP15_2893 at 3028.895 kb on - strand, within HP15_2893 at 3028.929 kb on - strand, within HP15_2893 at 3028.971 kb on - strand, within HP15_2893 at 3029.065 kb on + strand, within HP15_2893 at 3029.109 kb on + strand, within HP15_2893 at 3029.194 kb on - strand at 3029.238 kb on + strand at 3029.354 kb on - strand at 3029.356 kb on - strand at 3029.383 kb on + strand at 3029.418 kb on + strand at 3029.442 kb on + strand at 3029.575 kb on - strand, within HP15_2894 at 3029.637 kb on - strand, within HP15_2894 at 3029.639 kb on + strand, within HP15_2894 at 3029.667 kb on - strand, within HP15_2894 at 3029.761 kb on + strand, within HP15_2894 at 3029.769 kb on - strand, within HP15_2894 at 3029.913 kb on - strand, within HP15_2894 at 3029.916 kb on + strand, within HP15_2894 at 3029.963 kb on + strand, within HP15_2894 at 3029.963 kb on + strand, within HP15_2894 at 3030.067 kb on + strand, within HP15_2894 at 3030.075 kb on - strand, within HP15_2894 at 3030.075 kb on - strand, within HP15_2894 at 3030.111 kb on + strand, within HP15_2894 at 3030.119 kb on - strand, within HP15_2894 at 3030.146 kb on + strand, within HP15_2894 at 3030.166 kb on + strand, within HP15_2894 at 3030.235 kb on - strand, within HP15_2894 at 3030.270 kb on - strand, within HP15_2894 at 3030.436 kb on + strand at 3030.442 kb on + strand at 3030.442 kb on + strand at 3030.442 kb on + strand at 3030.443 kb on + strand at 3030.444 kb on - strand at 3030.449 kb on - strand at 3030.450 kb on - strand at 3030.481 kb on + strand at 3030.481 kb on + strand at 3030.481 kb on + strand at 3030.486 kb on + strand at 3030.580 kb on + strand at 3030.699 kb on + strand, within HP15_2895 at 3030.733 kb on - strand, within HP15_2895 at 3030.829 kb on + strand, within HP15_2895 at 3030.954 kb on - strand, within HP15_2895 at 3031.273 kb on + strand, within HP15_2895 at 3031.284 kb on + strand, within HP15_2895 at 3031.292 kb on - strand, within HP15_2895 at 3031.292 kb on - strand, within HP15_2895 at 3031.322 kb on - strand, within HP15_2895
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 3,028,454 - +0.2 3,028,464 - +0.2 3,028,486 - -0.1 3,028,517 + +0.2 3,028,601 + -2.7 3,028,685 + HP15_2893 0.22 +0.9 3,028,692 + HP15_2893 0.23 -1.0 3,028,700 - HP15_2893 0.24 -0.5 3,028,700 - HP15_2893 0.24 +0.0 3,028,700 - HP15_2893 0.24 +0.2 3,028,700 - HP15_2893 0.24 -2.4 3,028,702 + HP15_2893 0.24 -1.1 3,028,702 + HP15_2893 0.24 -0.5 3,028,710 - HP15_2893 0.25 -0.7 3,028,736 + HP15_2893 0.29 -0.8 3,028,792 - HP15_2893 0.38 -0.2 3,028,868 - HP15_2893 0.49 +0.0 3,028,893 - HP15_2893 0.53 +0.4 3,028,895 - HP15_2893 0.53 -0.4 3,028,895 - HP15_2893 0.53 +0.5 3,028,895 - HP15_2893 0.53 -0.0 3,028,929 - HP15_2893 0.59 -0.6 3,028,971 - HP15_2893 0.65 +1.8 3,029,065 + HP15_2893 0.79 +2.6 3,029,109 + HP15_2893 0.86 -0.2 3,029,194 - -1.6 3,029,238 + +0.3 3,029,354 - +0.6 3,029,356 - +1.8 3,029,383 + +0.3 3,029,418 + -0.4 3,029,442 + +1.0 3,029,575 - HP15_2894 0.13 -1.8 3,029,637 - HP15_2894 0.19 +1.5 3,029,639 + HP15_2894 0.19 +1.2 3,029,667 - HP15_2894 0.22 -0.6 3,029,761 + HP15_2894 0.32 -1.1 3,029,769 - HP15_2894 0.33 +0.3 3,029,913 - HP15_2894 0.48 -0.8 3,029,916 + HP15_2894 0.48 -0.8 3,029,963 + HP15_2894 0.53 -0.5 3,029,963 + HP15_2894 0.53 +1.0 3,030,067 + HP15_2894 0.63 +0.0 3,030,075 - HP15_2894 0.64 -1.8 3,030,075 - HP15_2894 0.64 -2.7 3,030,111 + HP15_2894 0.68 +0.4 3,030,119 - HP15_2894 0.69 -1.1 3,030,146 + HP15_2894 0.72 -1.5 3,030,166 + HP15_2894 0.74 -1.6 3,030,235 - HP15_2894 0.81 +0.0 3,030,270 - HP15_2894 0.84 +1.1 3,030,436 + -0.8 3,030,442 + -0.6 3,030,442 + +0.0 3,030,442 + +0.5 3,030,443 + +1.1 3,030,444 - -0.2 3,030,449 - +1.1 3,030,450 - +0.4 3,030,481 + +0.0 3,030,481 + +0.1 3,030,481 + +0.6 3,030,486 + +0.8 3,030,580 + +0.0 3,030,699 + HP15_2895 0.20 +0.3 3,030,733 - HP15_2895 0.23 +0.4 3,030,829 + HP15_2895 0.32 -0.2 3,030,954 - HP15_2895 0.44 -0.2 3,031,273 + HP15_2895 0.74 +0.2 3,031,284 + HP15_2895 0.75 -1.9 3,031,292 - HP15_2895 0.76 -0.5 3,031,292 - HP15_2895 0.76 -0.8 3,031,322 - HP15_2895 0.79 -1.3
Or see this region's nucleotide sequence