Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_291 and HP15_292 are separated by 31 nucleotides HP15_292 and HP15_293 are separated by 206 nucleotides HP15_293 and HP15_294 are separated by 210 nucleotides HP15_294 and HP15_295 are separated by 7 nucleotides
HP15_291: HP15_291 - membrane protein involved in aromatic hydrocarbon degradation, at 282,405 to 283,688
_291
HP15_292: HP15_292 - conserved hypothetical protein, at 283,720 to 284,121
_292
HP15_293: HP15_293 - DNA polymerase I, at 284,328 to 286,936
_293
HP15_294: HP15_294 - conserved hypothetical protein, secreted, at 287,147 to 287,485
_294
HP15_295: HP15_295 - fibronectin, type III domain protein, at 287,493 to 287,984
_295
Position (kb) 284
285
286
287 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 283.418 kb on + strand, within HP15_291 at 283.622 kb on + strand at 283.622 kb on + strand at 283.735 kb on + strand at 283.781 kb on + strand, within HP15_292 at 283.817 kb on + strand, within HP15_292 at 283.817 kb on + strand, within HP15_292 at 283.822 kb on + strand, within HP15_292 at 283.830 kb on - strand, within HP15_292 at 283.931 kb on - strand, within HP15_292 at 284.090 kb on - strand at 284.164 kb on + strand at 284.294 kb on + strand at 284.315 kb on + strand at 284.315 kb on + strand at 284.315 kb on + strand at 284.315 kb on + strand at 284.315 kb on + strand at 284.531 kb on - strand at 284.571 kb on - strand at 284.571 kb on - strand at 284.930 kb on - strand, within HP15_293 at 285.047 kb on + strand, within HP15_293 at 285.484 kb on - strand, within HP15_293 at 285.694 kb on + strand, within HP15_293 at 285.814 kb on - strand, within HP15_293 at 285.915 kb on - strand, within HP15_293 at 287.059 kb on + strand at 287.092 kb on + strand at 287.102 kb on + strand at 287.105 kb on - strand at 287.323 kb on - strand, within HP15_294 at 287.339 kb on + strand, within HP15_294 at 287.395 kb on + strand, within HP15_294 at 287.504 kb on - strand at 287.643 kb on - strand, within HP15_295 at 287.721 kb on + strand, within HP15_295 at 287.729 kb on + strand, within HP15_295 at 287.754 kb on - strand, within HP15_295 at 287.852 kb on + strand, within HP15_295
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 283,418 + HP15_291 0.79 -0.1 283,622 + -0.0 283,622 + +0.3 283,735 + -1.3 283,781 + HP15_292 0.15 -1.3 283,817 + HP15_292 0.24 +0.3 283,817 + HP15_292 0.24 -0.3 283,822 + HP15_292 0.25 -0.3 283,830 - HP15_292 0.27 -0.7 283,931 - HP15_292 0.52 +1.8 284,090 - +1.3 284,164 + +1.8 284,294 + -0.6 284,315 + -1.4 284,315 + -0.1 284,315 + +2.5 284,315 + +0.4 284,315 + -0.7 284,531 - -2.6 284,571 - -2.6 284,571 - +0.2 284,930 - HP15_293 0.23 -1.4 285,047 + HP15_293 0.28 -2.1 285,484 - HP15_293 0.44 -1.8 285,694 + HP15_293 0.52 -0.8 285,814 - HP15_293 0.57 -0.8 285,915 - HP15_293 0.61 -3.1 287,059 + -2.3 287,092 + -3.1 287,102 + -1.9 287,105 - -0.0 287,323 - HP15_294 0.52 +0.2 287,339 + HP15_294 0.57 -1.0 287,395 + HP15_294 0.73 -0.0 287,504 - +0.5 287,643 - HP15_295 0.30 +0.7 287,721 + HP15_295 0.46 -0.4 287,729 + HP15_295 0.48 +0.8 287,754 - HP15_295 0.53 -0.6 287,852 + HP15_295 0.73 +0.2
Or see this region's nucleotide sequence