Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2779 and HP15_2780 are separated by 97 nucleotides HP15_2780 and HP15_2781 are separated by 76 nucleotides HP15_2781 and HP15_2782 are separated by 15 nucleotides HP15_2782 and HP15_2783 overlap by 4 nucleotides
HP15_2779: HP15_2779 - GTP cyclohydrolase II, at 2,930,441 to 2,930,920
_2779
HP15_2780: HP15_2780 - monofunctional biosynthetic peptidoglycan transglycosylase, at 2,931,018 to 2,931,710
_2780
HP15_2781: HP15_2781 - hypothetical protein, at 2,931,787 to 2,931,900
_2781
HP15_2782: HP15_2782 - hypothetical protein, at 2,931,916 to 2,932,149
_2782
HP15_2783: HP15_2783 - polyhydroxyalkanoate depolymerase, intracellular, at 2,932,146 to 2,933,363
_2783
Position (kb)
2931
2932 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2930.791 kb on + strand, within HP15_2779 at 2930.799 kb on - strand, within HP15_2779 at 2930.836 kb on + strand, within HP15_2779 at 2930.844 kb on - strand, within HP15_2779 at 2930.892 kb on - strand at 2930.986 kb on + strand at 2931.055 kb on - strand at 2931.079 kb on + strand at 2931.081 kb on + strand at 2931.162 kb on - strand, within HP15_2780 at 2931.162 kb on - strand, within HP15_2780 at 2931.357 kb on + strand, within HP15_2780 at 2931.516 kb on + strand, within HP15_2780 at 2931.721 kb on - strand at 2931.785 kb on + strand at 2931.814 kb on - strand, within HP15_2781 at 2931.897 kb on + strand at 2931.910 kb on - strand at 2931.910 kb on - strand at 2931.951 kb on + strand, within HP15_2782 at 2931.990 kb on - strand, within HP15_2782 at 2932.120 kb on - strand, within HP15_2782 at 2932.144 kb on - strand at 2932.172 kb on - strand at 2932.174 kb on + strand at 2932.241 kb on - strand at 2932.304 kb on + strand, within HP15_2783 at 2932.345 kb on - strand, within HP15_2783 at 2932.373 kb on - strand, within HP15_2783 at 2932.387 kb on - strand, within HP15_2783 at 2932.398 kb on + strand at 2932.409 kb on + strand, within HP15_2783 at 2932.417 kb on - strand, within HP15_2783 at 2932.437 kb on - strand, within HP15_2783 at 2932.499 kb on + strand, within HP15_2783 at 2932.577 kb on - strand, within HP15_2783 at 2932.841 kb on + strand, within HP15_2783
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 2,930,791 + HP15_2779 0.73 -0.5 2,930,799 - HP15_2779 0.75 +0.1 2,930,836 + HP15_2779 0.82 -0.1 2,930,844 - HP15_2779 0.84 -0.6 2,930,892 - -1.4 2,930,986 + -0.3 2,931,055 - -0.6 2,931,079 + +0.2 2,931,081 + -0.5 2,931,162 - HP15_2780 0.21 -1.4 2,931,162 - HP15_2780 0.21 -0.1 2,931,357 + HP15_2780 0.49 -0.2 2,931,516 + HP15_2780 0.72 +0.3 2,931,721 - +0.7 2,931,785 + +0.5 2,931,814 - HP15_2781 0.24 -1.8 2,931,897 + +1.7 2,931,910 - -2.4 2,931,910 - +0.8 2,931,951 + HP15_2782 0.15 +0.6 2,931,990 - HP15_2782 0.32 -0.5 2,932,120 - HP15_2782 0.87 +0.6 2,932,144 - -0.4 2,932,172 - -0.8 2,932,174 + +1.1 2,932,241 - +0.6 2,932,304 + HP15_2783 0.13 -1.2 2,932,345 - HP15_2783 0.16 -1.5 2,932,373 - HP15_2783 0.19 -0.1 2,932,387 - HP15_2783 0.20 +2.1 2,932,398 + -0.4 2,932,409 + HP15_2783 0.22 -0.9 2,932,417 - HP15_2783 0.22 -0.3 2,932,437 - HP15_2783 0.24 -1.0 2,932,499 + HP15_2783 0.29 +1.7 2,932,577 - HP15_2783 0.35 -0.4 2,932,841 + HP15_2783 0.57 -0.0
Or see this region's nucleotide sequence