Experiment: m.b. Furfuryl Alcohol 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c28260 and PGA1_c28270 are separated by 224 nucleotides PGA1_c28270 and PGA1_c28280 are separated by 13 nucleotides
PGA1_c28260: PGA1_c28260 - glyoxylate reductase GyaR, at 2,954,558 to 2,955,544
_c28260
PGA1_c28270: PGA1_c28270 - Uncharacterized protein conserved in bacteria, at 2,955,769 to 2,956,302
_c28270
PGA1_c28280: PGA1_c28280 - hypothetical protein, at 2,956,316 to 2,958,946
_c28280
Position (kb)
2955
2956
2957 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2954.831 kb on - strand, within PGA1_c28260 at 2954.893 kb on - strand, within PGA1_c28260 at 2954.915 kb on + strand, within PGA1_c28260 at 2954.919 kb on + strand, within PGA1_c28260 at 2954.941 kb on + strand, within PGA1_c28260 at 2955.028 kb on - strand, within PGA1_c28260 at 2955.160 kb on + strand, within PGA1_c28260 at 2955.160 kb on + strand, within PGA1_c28260 at 2955.175 kb on - strand, within PGA1_c28260 at 2955.200 kb on - strand, within PGA1_c28260 at 2955.200 kb on - strand, within PGA1_c28260 at 2955.246 kb on - strand, within PGA1_c28260 at 2955.246 kb on - strand, within PGA1_c28260 at 2955.356 kb on - strand, within PGA1_c28260 at 2955.358 kb on - strand, within PGA1_c28260 at 2955.404 kb on + strand, within PGA1_c28260 at 2955.586 kb on - strand at 2955.624 kb on - strand at 2955.680 kb on + strand at 2955.680 kb on + strand at 2955.685 kb on + strand at 2955.685 kb on + strand at 2955.688 kb on - strand at 2955.688 kb on - strand at 2955.730 kb on - strand at 2955.744 kb on - strand at 2956.418 kb on - strand at 2956.418 kb on - strand at 2956.464 kb on + strand at 2956.464 kb on + strand at 2956.464 kb on + strand at 2956.472 kb on - strand at 2956.472 kb on - strand at 2956.580 kb on - strand, within PGA1_c28280 at 2956.580 kb on - strand, within PGA1_c28280 at 2956.644 kb on + strand, within PGA1_c28280 at 2956.662 kb on + strand, within PGA1_c28280 at 2956.665 kb on - strand, within PGA1_c28280 at 2956.670 kb on - strand, within PGA1_c28280 at 2956.670 kb on - strand, within PGA1_c28280 at 2956.673 kb on + strand, within PGA1_c28280 at 2956.733 kb on - strand, within PGA1_c28280 at 2956.733 kb on - strand, within PGA1_c28280 at 2956.753 kb on + strand, within PGA1_c28280 at 2956.761 kb on - strand, within PGA1_c28280 at 2956.763 kb on + strand, within PGA1_c28280 at 2956.768 kb on + strand, within PGA1_c28280 at 2956.791 kb on + strand, within PGA1_c28280 at 2956.844 kb on + strand, within PGA1_c28280 at 2956.844 kb on + strand, within PGA1_c28280 at 2956.854 kb on - strand, within PGA1_c28280 at 2956.942 kb on - strand, within PGA1_c28280 at 2956.947 kb on - strand, within PGA1_c28280 at 2956.965 kb on + strand, within PGA1_c28280 at 2956.973 kb on - strand, within PGA1_c28280 at 2957.046 kb on - strand, within PGA1_c28280 at 2957.046 kb on - strand, within PGA1_c28280 at 2957.082 kb on - strand, within PGA1_c28280 at 2957.149 kb on + strand, within PGA1_c28280 at 2957.164 kb on - strand, within PGA1_c28280 at 2957.249 kb on - strand, within PGA1_c28280
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.032 vol% remove 2,954,831 - PGA1_c28260 0.28 -0.7 2,954,893 - PGA1_c28260 0.34 -0.7 2,954,915 + PGA1_c28260 0.36 -0.3 2,954,919 + PGA1_c28260 0.37 -1.9 2,954,941 + PGA1_c28260 0.39 -1.9 2,955,028 - PGA1_c28260 0.48 +0.6 2,955,160 + PGA1_c28260 0.61 +0.9 2,955,160 + PGA1_c28260 0.61 +0.6 2,955,175 - PGA1_c28260 0.63 +2.2 2,955,200 - PGA1_c28260 0.65 -0.1 2,955,200 - PGA1_c28260 0.65 -1.1 2,955,246 - PGA1_c28260 0.70 -0.7 2,955,246 - PGA1_c28260 0.70 +0.2 2,955,356 - PGA1_c28260 0.81 -0.0 2,955,358 - PGA1_c28260 0.81 -0.1 2,955,404 + PGA1_c28260 0.86 -1.7 2,955,586 - -3.0 2,955,624 - -1.4 2,955,680 + -0.4 2,955,680 + -1.4 2,955,685 + -0.1 2,955,685 + -1.7 2,955,688 - -1.4 2,955,688 - +0.3 2,955,730 - -2.3 2,955,744 - -0.9 2,956,418 - +0.9 2,956,418 - +1.4 2,956,464 + -0.4 2,956,464 + -1.0 2,956,464 + -2.1 2,956,472 - +1.1 2,956,472 - -1.9 2,956,580 - PGA1_c28280 0.10 +0.2 2,956,580 - PGA1_c28280 0.10 +0.4 2,956,644 + PGA1_c28280 0.12 +1.9 2,956,662 + PGA1_c28280 0.13 -2.4 2,956,665 - PGA1_c28280 0.13 -1.6 2,956,670 - PGA1_c28280 0.13 -0.7 2,956,670 - PGA1_c28280 0.13 -1.3 2,956,673 + PGA1_c28280 0.14 -1.1 2,956,733 - PGA1_c28280 0.16 -1.9 2,956,733 - PGA1_c28280 0.16 -1.9 2,956,753 + PGA1_c28280 0.17 -0.8 2,956,761 - PGA1_c28280 0.17 -2.2 2,956,763 + PGA1_c28280 0.17 +0.4 2,956,768 + PGA1_c28280 0.17 -0.2 2,956,791 + PGA1_c28280 0.18 -1.1 2,956,844 + PGA1_c28280 0.20 -3.4 2,956,844 + PGA1_c28280 0.20 +0.9 2,956,854 - PGA1_c28280 0.20 -0.7 2,956,942 - PGA1_c28280 0.24 -1.8 2,956,947 - PGA1_c28280 0.24 +0.4 2,956,965 + PGA1_c28280 0.25 -0.7 2,956,973 - PGA1_c28280 0.25 +0.5 2,957,046 - PGA1_c28280 0.28 +0.7 2,957,046 - PGA1_c28280 0.28 -0.5 2,957,082 - PGA1_c28280 0.29 -1.9 2,957,149 + PGA1_c28280 0.32 -2.1 2,957,164 - PGA1_c28280 0.32 -0.5 2,957,249 - PGA1_c28280 0.35 +1.1
Or see this region's nucleotide sequence