Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2507 and HP15_2508 are separated by 15 nucleotides HP15_2508 and HP15_2509 are separated by 161 nucleotides HP15_2509 and HP15_2510 overlap by 26 nucleotides
HP15_2507: HP15_2507 - ribosome-associated GTPase, at 2,648,025 to 2,649,080
_2507
HP15_2508: HP15_2508 - OmpA/MotB domain protein, at 2,649,096 to 2,649,836
_2508
HP15_2509: HP15_2509 - hypothetical protein, at 2,649,998 to 2,650,111
_2509
HP15_2510: HP15_2510 - flagellar motor protein MotA, at 2,650,086 to 2,650,937
_2510
Position (kb)
2649
2650 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2648.144 kb on + strand, within HP15_2507 at 2648.157 kb on - strand, within HP15_2507 at 2649.311 kb on - strand, within HP15_2508 at 2649.339 kb on - strand, within HP15_2508 at 2649.368 kb on + strand, within HP15_2508 at 2649.403 kb on + strand, within HP15_2508 at 2649.474 kb on - strand, within HP15_2508 at 2649.487 kb on - strand, within HP15_2508 at 2649.514 kb on + strand, within HP15_2508 at 2649.577 kb on + strand, within HP15_2508 at 2649.602 kb on - strand, within HP15_2508 at 2649.649 kb on + strand, within HP15_2508 at 2649.667 kb on + strand, within HP15_2508 at 2649.667 kb on + strand, within HP15_2508 at 2649.733 kb on - strand, within HP15_2508 at 2649.830 kb on + strand at 2650.068 kb on + strand, within HP15_2509 at 2650.076 kb on - strand, within HP15_2509 at 2650.221 kb on + strand, within HP15_2510 at 2650.284 kb on + strand, within HP15_2510 at 2650.325 kb on - strand, within HP15_2510 at 2650.468 kb on - strand, within HP15_2510 at 2650.556 kb on - strand, within HP15_2510 at 2650.602 kb on - strand, within HP15_2510 at 2650.687 kb on + strand, within HP15_2510 at 2650.809 kb on + strand, within HP15_2510 at 2650.809 kb on + strand, within HP15_2510 at 2650.817 kb on - strand, within HP15_2510
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 2,648,144 + HP15_2507 0.11 +0.1 2,648,157 - HP15_2507 0.12 -3.9 2,649,311 - HP15_2508 0.29 -1.0 2,649,339 - HP15_2508 0.33 -2.5 2,649,368 + HP15_2508 0.37 +1.8 2,649,403 + HP15_2508 0.41 -2.3 2,649,474 - HP15_2508 0.51 -1.5 2,649,487 - HP15_2508 0.53 -0.3 2,649,514 + HP15_2508 0.56 -0.3 2,649,577 + HP15_2508 0.65 -0.8 2,649,602 - HP15_2508 0.68 -1.0 2,649,649 + HP15_2508 0.75 +0.2 2,649,667 + HP15_2508 0.77 +0.1 2,649,667 + HP15_2508 0.77 +0.7 2,649,733 - HP15_2508 0.86 -1.7 2,649,830 + +0.7 2,650,068 + HP15_2509 0.61 -0.6 2,650,076 - HP15_2509 0.68 -0.4 2,650,221 + HP15_2510 0.16 -0.2 2,650,284 + HP15_2510 0.23 +0.6 2,650,325 - HP15_2510 0.28 -0.2 2,650,468 - HP15_2510 0.45 +1.3 2,650,556 - HP15_2510 0.55 -2.2 2,650,602 - HP15_2510 0.61 -0.9 2,650,687 + HP15_2510 0.71 -0.9 2,650,809 + HP15_2510 0.85 +0.2 2,650,809 + HP15_2510 0.85 +1.1 2,650,817 - HP15_2510 0.86 -1.2
Or see this region's nucleotide sequence