Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2466 and HP15_2467 are separated by 444 nucleotides HP15_2467 and HP15_2468 are separated by 11 nucleotides HP15_2468 and HP15_2469 overlap by 23 nucleotides HP15_2469 and HP15_2470 overlap by 4 nucleotides
HP15_2466: HP15_2466 - tRNA-i(6)A37 thiotransferase enzyme MiaB, at 2,605,925 to 2,607,271
_2466
HP15_2467: HP15_2467 - PhoH family protein, at 2,607,716 to 2,608,699
_2467
HP15_2468: HP15_2468 - metalloprotease YbeY, at 2,608,711 to 2,609,058
_2468
HP15_2469: HP15_2469 - predicted metal-dependent hydrolase, at 2,609,036 to 2,609,170
_2469
HP15_2470: HP15_2470 - metal ion transporter, at 2,609,167 to 2,610,012
_2470
Position (kb)
2607
2608
2609 Strain fitness (log2 ratio)
-2
-1
0
1 at 2606.734 kb on - strand, within HP15_2466 at 2606.767 kb on + strand, within HP15_2466 at 2606.888 kb on - strand, within HP15_2466 at 2607.070 kb on + strand, within HP15_2466 at 2607.106 kb on + strand, within HP15_2466 at 2607.106 kb on + strand, within HP15_2466 at 2607.114 kb on - strand, within HP15_2466 at 2607.315 kb on + strand at 2607.316 kb on + strand at 2607.466 kb on + strand at 2607.478 kb on + strand at 2607.520 kb on - strand at 2607.585 kb on + strand at 2608.025 kb on + strand, within HP15_2467 at 2608.033 kb on + strand, within HP15_2467 at 2608.041 kb on - strand, within HP15_2467 at 2608.281 kb on + strand, within HP15_2467 at 2608.504 kb on - strand, within HP15_2467 at 2608.606 kb on + strand at 2608.606 kb on + strand at 2608.614 kb on - strand at 2609.119 kb on + strand, within HP15_2469 at 2609.156 kb on + strand, within HP15_2469 at 2609.449 kb on + strand, within HP15_2470 at 2609.685 kb on - strand, within HP15_2470
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 2,606,734 - HP15_2466 0.60 -0.7 2,606,767 + HP15_2466 0.63 -1.3 2,606,888 - HP15_2466 0.71 -1.3 2,607,070 + HP15_2466 0.85 -1.0 2,607,106 + HP15_2466 0.88 -0.2 2,607,106 + HP15_2466 0.88 -1.4 2,607,114 - HP15_2466 0.88 -1.5 2,607,315 + -0.4 2,607,316 + -1.2 2,607,466 + +1.3 2,607,478 + -1.5 2,607,520 - +0.1 2,607,585 + -1.6 2,608,025 + HP15_2467 0.31 -0.2 2,608,033 + HP15_2467 0.32 -1.2 2,608,041 - HP15_2467 0.33 -0.2 2,608,281 + HP15_2467 0.57 -0.5 2,608,504 - HP15_2467 0.80 -0.7 2,608,606 + -0.0 2,608,606 + -0.5 2,608,614 - -0.7 2,609,119 + HP15_2469 0.61 +1.7 2,609,156 + HP15_2469 0.89 +0.1 2,609,449 + HP15_2470 0.33 -1.8 2,609,685 - HP15_2470 0.61 -2.2
Or see this region's nucleotide sequence