Strain Fitness in Marinobacter adhaerens HP15 around HP15_24

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_23 and HP15_24 are separated by 774 nucleotidesHP15_24 and HP15_25 are separated by 165 nucleotides HP15_23: HP15_23 - conserved hypothetical protein, at 25,999 to 27,033 _23 HP15_24: HP15_24 - membrane protein, at 27,808 to 28,092 _24 HP15_25: HP15_25 - methyltransferase, FkbM family protein-like protein, at 28,258 to 29,088 _25 Position (kb) 27 28 29Strain fitness (log2 ratio) -2 -1 0 1 2at 26.891 kb on + strand, within HP15_23at 26.906 kb on + strand, within HP15_23at 26.914 kb on - strand, within HP15_23at 26.914 kb on - strand, within HP15_23at 26.914 kb on - strand, within HP15_23at 26.944 kb on + strandat 26.957 kb on - strandat 26.957 kb on - strandat 27.058 kb on + strandat 27.081 kb on - strandat 27.436 kb on + strandat 27.446 kb on + strandat 27.464 kb on - strandat 27.502 kb on + strandat 27.534 kb on + strandat 27.542 kb on - strandat 27.719 kb on - strandat 27.799 kb on + strandat 27.800 kb on + strandat 27.870 kb on + strand, within HP15_24at 27.870 kb on + strand, within HP15_24at 28.004 kb on - strand, within HP15_24at 28.024 kb on - strand, within HP15_24at 28.080 kb on + strandat 28.173 kb on - strandat 28.199 kb on + strandat 28.206 kb on + strandat 28.214 kb on - strandat 28.247 kb on - strandat 28.271 kb on + strandat 28.342 kb on - strand, within HP15_25at 28.362 kb on + strand, within HP15_25at 28.433 kb on - strand, within HP15_25at 28.433 kb on - strand, within HP15_25at 28.451 kb on + strand, within HP15_25at 28.480 kb on - strand, within HP15_25at 28.493 kb on - strand, within HP15_25at 28.582 kb on + strand, within HP15_25at 28.598 kb on + strand, within HP15_25at 28.611 kb on - strand, within HP15_25at 28.624 kb on + strand, within HP15_25at 28.624 kb on + strand, within HP15_25at 28.639 kb on - strand, within HP15_25at 28.639 kb on - strand, within HP15_25at 28.639 kb on - strand, within HP15_25at 28.639 kb on - strand, within HP15_25at 28.646 kb on - strand, within HP15_25at 28.651 kb on - strand, within HP15_25at 28.656 kb on - strand, within HP15_25at 28.679 kb on + strand, within HP15_25at 28.679 kb on + strand, within HP15_25at 28.695 kb on + strand, within HP15_25at 28.716 kb on - strand, within HP15_25at 28.759 kb on - strand, within HP15_25at 28.774 kb on + strand, within HP15_25at 28.801 kb on + strand, within HP15_25at 28.829 kb on + strand, within HP15_25at 28.837 kb on - strand, within HP15_25at 28.866 kb on + strand, within HP15_25at 28.866 kb on + strand, within HP15_25at 28.876 kb on + strand, within HP15_25at 28.879 kb on - strand, within HP15_25at 28.881 kb on + strand, within HP15_25at 28.889 kb on - strand, within HP15_25at 28.942 kb on - strand, within HP15_25at 29.084 kb on + strandat 29.092 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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26,891 + HP15_23 0.86 -2.0
26,906 + HP15_23 0.88 +1.1
26,914 - HP15_23 0.88 +2.1
26,914 - HP15_23 0.88 -1.3
26,914 - HP15_23 0.88 -0.7
26,944 + -0.2
26,957 - +0.3
26,957 - +0.1
27,058 + -0.3
27,081 - -0.7
27,436 + -0.3
27,446 + +1.9
27,464 - +0.5
27,502 + +0.6
27,534 + -0.6
27,542 - -0.7
27,719 - +1.2
27,799 + +0.3
27,800 + -0.9
27,870 + HP15_24 0.22 -0.3
27,870 + HP15_24 0.22 -0.1
28,004 - HP15_24 0.69 -0.7
28,024 - HP15_24 0.76 -2.6
28,080 + -1.0
28,173 - +1.5
28,199 + +0.4
28,206 + +1.0
28,214 - +0.3
28,247 - -1.2
28,271 + -2.5
28,342 - HP15_25 0.10 -0.5
28,362 + HP15_25 0.13 -0.3
28,433 - HP15_25 0.21 +0.8
28,433 - HP15_25 0.21 -0.7
28,451 + HP15_25 0.23 -1.0
28,480 - HP15_25 0.27 +0.5
28,493 - HP15_25 0.28 +2.3
28,582 + HP15_25 0.39 +1.6
28,598 + HP15_25 0.41 +0.1
28,611 - HP15_25 0.42 +0.8
28,624 + HP15_25 0.44 -1.7
28,624 + HP15_25 0.44 -0.3
28,639 - HP15_25 0.46 -0.6
28,639 - HP15_25 0.46 -0.7
28,639 - HP15_25 0.46 -0.7
28,639 - HP15_25 0.46 +1.4
28,646 - HP15_25 0.47 +0.1
28,651 - HP15_25 0.47 +0.9
28,656 - HP15_25 0.48 -0.6
28,679 + HP15_25 0.51 +0.6
28,679 + HP15_25 0.51 -0.2
28,695 + HP15_25 0.53 -0.1
28,716 - HP15_25 0.55 -1.2
28,759 - HP15_25 0.60 +0.2
28,774 + HP15_25 0.62 +0.1
28,801 + HP15_25 0.65 +0.3
28,829 + HP15_25 0.69 -0.4
28,837 - HP15_25 0.70 -0.9
28,866 + HP15_25 0.73 +0.5
28,866 + HP15_25 0.73 -1.0
28,876 + HP15_25 0.74 +0.4
28,879 - HP15_25 0.75 -0.6
28,881 + HP15_25 0.75 -0.4
28,889 - HP15_25 0.76 -0.9
28,942 - HP15_25 0.82 -0.4
29,084 + -0.6
29,092 + +1.3

Or see this region's nucleotide sequence