Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c24120

Experiment: m.b. Furfuryl Alcohol 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c24100 and PGA1_c24110 are separated by 173 nucleotidesPGA1_c24110 and PGA1_c24120 are separated by 251 nucleotidesPGA1_c24120 and PGA1_c24130 are separated by 165 nucleotides PGA1_c24100: PGA1_c24100 - hypothetical protein, at 2,515,438 to 2,516,868 _c24100 PGA1_c24110: PGA1_c24110 - hypothetical protein, at 2,517,042 to 2,517,224 _c24110 PGA1_c24120: PGA1_c24120 - hypothetical protein, at 2,517,476 to 2,517,787 _c24120 PGA1_c24130: PGA1_c24130 - transcriptional regulator, LysR family, at 2,517,953 to 2,518,930 _c24130 Position (kb) 2517 2518Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2516.511 kb on + strand, within PGA1_c24100at 2516.516 kb on - strand, within PGA1_c24100at 2516.536 kb on - strand, within PGA1_c24100at 2516.551 kb on - strand, within PGA1_c24100at 2516.564 kb on + strand, within PGA1_c24100at 2516.574 kb on + strand, within PGA1_c24100at 2516.579 kb on + strand, within PGA1_c24100at 2516.615 kb on - strand, within PGA1_c24100at 2516.758 kb on + strandat 2516.821 kb on - strandat 2516.861 kb on - strandat 2516.870 kb on - strandat 2516.901 kb on + strandat 2516.948 kb on + strandat 2516.956 kb on - strandat 2517.032 kb on - strandat 2517.032 kb on - strandat 2517.050 kb on + strandat 2517.050 kb on + strandat 2517.050 kb on + strandat 2517.071 kb on - strand, within PGA1_c24110at 2517.095 kb on + strand, within PGA1_c24110at 2517.098 kb on - strand, within PGA1_c24110at 2517.101 kb on + strand, within PGA1_c24110at 2517.102 kb on + strand, within PGA1_c24110at 2517.103 kb on - strand, within PGA1_c24110at 2517.144 kb on - strand, within PGA1_c24110at 2517.168 kb on + strand, within PGA1_c24110at 2517.176 kb on - strand, within PGA1_c24110at 2517.208 kb on + strandat 2517.216 kb on - strandat 2517.216 kb on - strandat 2517.216 kb on - strandat 2517.216 kb on - strandat 2517.272 kb on + strandat 2517.295 kb on - strandat 2517.388 kb on - strandat 2517.403 kb on + strandat 2517.433 kb on - strandat 2517.433 kb on - strandat 2517.435 kb on + strandat 2517.435 kb on + strandat 2517.440 kb on + strandat 2517.440 kb on + strandat 2517.443 kb on - strandat 2517.448 kb on - strandat 2517.507 kb on - strandat 2517.792 kb on - strandat 2517.794 kb on - strandat 2517.860 kb on + strandat 2517.913 kb on + strandat 2517.937 kb on + strandat 2517.945 kb on - strandat 2517.974 kb on - strandat 2517.974 kb on - strandat 2517.981 kb on + strandat 2517.981 kb on + strandat 2517.981 kb on + strandat 2517.981 kb on + strandat 2517.981 kb on + strandat 2517.981 kb on + strandat 2517.981 kb on + strandat 2517.981 kb on + strandat 2517.981 kb on + strandat 2517.981 kb on + strandat 2517.981 kb on + strandat 2517.981 kb on + strandat 2517.981 kb on + strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2518.025 kb on - strandat 2518.037 kb on - strandat 2518.037 kb on - strandat 2518.078 kb on - strand, within PGA1_c24130at 2518.106 kb on - strand, within PGA1_c24130at 2518.168 kb on + strand, within PGA1_c24130at 2518.217 kb on - strand, within PGA1_c24130at 2518.242 kb on - strand, within PGA1_c24130at 2518.242 kb on - strand, within PGA1_c24130at 2518.306 kb on + strand, within PGA1_c24130at 2518.696 kb on - strand, within PGA1_c24130

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.032 vol%
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2,516,511 + PGA1_c24100 0.75 -0.3
2,516,516 - PGA1_c24100 0.75 +0.9
2,516,536 - PGA1_c24100 0.77 -0.6
2,516,551 - PGA1_c24100 0.78 -0.2
2,516,564 + PGA1_c24100 0.79 -1.1
2,516,574 + PGA1_c24100 0.79 -2.6
2,516,579 + PGA1_c24100 0.80 +0.1
2,516,615 - PGA1_c24100 0.82 -0.4
2,516,758 + +0.1
2,516,821 - -0.2
2,516,861 - -0.2
2,516,870 - +0.2
2,516,901 + -0.4
2,516,948 + +1.5
2,516,956 - +0.2
2,517,032 - -0.5
2,517,032 - +0.5
2,517,050 + -0.4
2,517,050 + +1.1
2,517,050 + -0.3
2,517,071 - PGA1_c24110 0.16 -0.1
2,517,095 + PGA1_c24110 0.29 +0.8
2,517,098 - PGA1_c24110 0.31 -0.1
2,517,101 + PGA1_c24110 0.32 -1.6
2,517,102 + PGA1_c24110 0.33 -0.7
2,517,103 - PGA1_c24110 0.33 -0.4
2,517,144 - PGA1_c24110 0.56 +0.8
2,517,168 + PGA1_c24110 0.69 -1.5
2,517,176 - PGA1_c24110 0.73 -0.8
2,517,208 + +0.8
2,517,216 - +0.7
2,517,216 - -0.7
2,517,216 - +0.4
2,517,216 - -1.2
2,517,272 + -0.4
2,517,295 - -0.7
2,517,388 - -0.8
2,517,403 + -2.0
2,517,433 - -0.7
2,517,433 - -0.4
2,517,435 + +0.7
2,517,435 + -1.3
2,517,440 + -1.8
2,517,440 + -0.7
2,517,443 - -1.5
2,517,448 - -0.7
2,517,507 - +1.0
2,517,792 - -1.2
2,517,794 - -1.1
2,517,860 + -1.0
2,517,913 + -2.5
2,517,937 + +1.2
2,517,945 - -1.8
2,517,974 - -0.8
2,517,974 - -3.0
2,517,981 + -0.4
2,517,981 + +0.1
2,517,981 + -2.1
2,517,981 + -0.8
2,517,981 + +1.1
2,517,981 + -2.0
2,517,981 + +0.3
2,517,981 + +2.2
2,517,981 + -0.0
2,517,981 + +0.0
2,517,981 + +1.0
2,517,981 + +1.1
2,517,981 + -1.1
2,517,989 - -0.2
2,517,989 - +2.6
2,517,989 - +0.4
2,517,989 - -0.2
2,517,989 - -1.6
2,517,989 - +1.0
2,517,989 - +0.9
2,517,989 - -0.8
2,517,989 - -0.6
2,517,989 - +0.2
2,517,989 - +0.1
2,517,989 - -0.4
2,517,989 - +0.1
2,517,989 - +0.6
2,518,025 - -0.2
2,518,037 - -0.3
2,518,037 - -2.9
2,518,078 - PGA1_c24130 0.13 +0.8
2,518,106 - PGA1_c24130 0.16 -0.7
2,518,168 + PGA1_c24130 0.22 -1.0
2,518,217 - PGA1_c24130 0.27 +0.3
2,518,242 - PGA1_c24130 0.30 -0.9
2,518,242 - PGA1_c24130 0.30 -0.8
2,518,306 + PGA1_c24130 0.36 -2.9
2,518,696 - PGA1_c24130 0.76 -0.3

Or see this region's nucleotide sequence