Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2320 and HP15_2321 are separated by 24 nucleotides HP15_2321 and HP15_2322 are separated by 122 nucleotides HP15_2322 and HP15_2323 overlap by 1 nucleotides
HP15_2320: HP15_2320 - response regulator receiver protein, at 2,438,918 to 2,440,675
_2320
HP15_2321: HP15_2321 - anti-sigma-factor antagonist, at 2,440,700 to 2,441,005
_2321
HP15_2322: HP15_2322 - flagellar FliJ protein, at 2,441,128 to 2,441,571
_2322
HP15_2323: HP15_2323 - flagellum-specific ATP synthase FliI, at 2,441,571 to 2,442,965
_2323
Position (kb)
2440
2441
2442 Strain fitness (log2 ratio)
-2
-1
0
1 at 2439.712 kb on + strand, within HP15_2320 at 2439.808 kb on + strand, within HP15_2320 at 2440.108 kb on - strand, within HP15_2320 at 2440.156 kb on + strand, within HP15_2320 at 2440.177 kb on - strand, within HP15_2320 at 2440.304 kb on - strand, within HP15_2320 at 2440.373 kb on + strand, within HP15_2320 at 2440.376 kb on - strand, within HP15_2320 at 2440.530 kb on - strand at 2440.537 kb on + strand at 2440.650 kb on - strand at 2440.725 kb on + strand at 2440.742 kb on + strand, within HP15_2321 at 2440.903 kb on + strand, within HP15_2321 at 2441.058 kb on + strand at 2441.066 kb on - strand at 2441.074 kb on + strand at 2441.362 kb on - strand, within HP15_2322 at 2441.388 kb on + strand, within HP15_2322 at 2441.396 kb on - strand, within HP15_2322 at 2441.510 kb on - strand, within HP15_2322 at 2441.529 kb on + strand at 2441.529 kb on + strand at 2441.537 kb on - strand at 2441.545 kb on - strand at 2441.632 kb on - strand at 2441.699 kb on + strand at 2441.818 kb on - strand, within HP15_2323 at 2441.919 kb on + strand, within HP15_2323
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 2,439,712 + HP15_2320 0.45 +0.8 2,439,808 + HP15_2320 0.51 +0.4 2,440,108 - HP15_2320 0.68 -0.2 2,440,156 + HP15_2320 0.70 -2.6 2,440,177 - HP15_2320 0.72 +1.3 2,440,304 - HP15_2320 0.79 -0.5 2,440,373 + HP15_2320 0.83 -2.2 2,440,376 - HP15_2320 0.83 +1.0 2,440,530 - -2.3 2,440,537 + -0.2 2,440,650 - -1.7 2,440,725 + +1.2 2,440,742 + HP15_2321 0.14 -1.4 2,440,903 + HP15_2321 0.66 -1.2 2,441,058 + +0.6 2,441,066 - +0.6 2,441,074 + -0.7 2,441,362 - HP15_2322 0.53 -1.0 2,441,388 + HP15_2322 0.59 -1.5 2,441,396 - HP15_2322 0.60 -1.8 2,441,510 - HP15_2322 0.86 +0.9 2,441,529 + +0.2 2,441,529 + +0.0 2,441,537 - +0.5 2,441,545 - -1.0 2,441,632 - +0.3 2,441,699 + -0.5 2,441,818 - HP15_2323 0.18 +0.3 2,441,919 + HP15_2323 0.25 +0.2
Or see this region's nucleotide sequence