Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2261 and HP15_2262 are separated by 55 nucleotides HP15_2262 and HP15_2263 are separated by 60 nucleotides HP15_2263 and HP15_2264 are separated by 273 nucleotides HP15_2264 and HP15_2265 are separated by 13 nucleotides
HP15_2261: HP15_2261 - ErfK/YbiS/YcfS/YnhG family protein, at 2,382,824 to 2,383,318
_2261
HP15_2262: HP15_2262 - transcriptional Regulator, TetR family protein, at 2,383,374 to 2,384,051
_2262
HP15_2263: HP15_2263 - conserved hypothetical protein, membrane, at 2,384,112 to 2,384,915
_2263
HP15_2264: HP15_2264 - riboflavin synthase subunit alpha, at 2,385,189 to 2,385,809
_2264
HP15_2265: HP15_2265 - rRNA (guanine-N2-)-methyltransferase, RsmD, at 2,385,823 to 2,386,980
_2265
Position (kb)
2384
2385 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2383.321 kb on - strand at 2383.389 kb on - strand at 2383.508 kb on + strand, within HP15_2262 at 2383.806 kb on - strand, within HP15_2262 at 2383.937 kb on + strand, within HP15_2262 at 2383.996 kb on + strand at 2384.151 kb on + strand at 2384.210 kb on - strand, within HP15_2263 at 2384.351 kb on + strand, within HP15_2263 at 2384.383 kb on - strand, within HP15_2263 at 2384.696 kb on + strand, within HP15_2263 at 2384.937 kb on - strand at 2384.954 kb on + strand at 2384.954 kb on + strand at 2384.955 kb on - strand at 2385.780 kb on + strand at 2385.788 kb on - strand at 2385.853 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 2,383,321 - -0.1 2,383,389 - -0.2 2,383,508 + HP15_2262 0.20 -1.6 2,383,806 - HP15_2262 0.64 -0.9 2,383,937 + HP15_2262 0.83 +0.4 2,383,996 + -0.3 2,384,151 + -0.0 2,384,210 - HP15_2263 0.12 -1.1 2,384,351 + HP15_2263 0.30 +1.6 2,384,383 - HP15_2263 0.34 -0.6 2,384,696 + HP15_2263 0.73 -0.4 2,384,937 - -0.9 2,384,954 + -0.2 2,384,954 + -3.2 2,384,955 - +1.0 2,385,780 + +1.6 2,385,788 - -0.2 2,385,853 + -0.0
Or see this region's nucleotide sequence