Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2224 and HP15_2225 are separated by 155 nucleotides HP15_2225 and HP15_2226 are separated by 151 nucleotides HP15_2226 and HP15_2227 are separated by 4 nucleotides
HP15_2224: HP15_2224 - PHP C-terminal domain protein, at 2,342,472 to 2,343,326
_2224
HP15_2225: HP15_2225 - YciI-like protein, at 2,343,482 to 2,343,781
_2225
HP15_2226: HP15_2226 - SH3, type 3 domain protein, at 2,343,933 to 2,344,577
_2226
HP15_2227: HP15_2227 - protein containing type IV pilus assembly PilZ domain, at 2,344,582 to 2,344,872
_2227
Position (kb)
2343
2344 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2342.530 kb on - strand at 2342.530 kb on - strand at 2342.530 kb on - strand at 2342.563 kb on + strand, within HP15_2224 at 2342.676 kb on - strand, within HP15_2224 at 2342.896 kb on + strand, within HP15_2224 at 2342.896 kb on + strand, within HP15_2224 at 2342.908 kb on + strand, within HP15_2224 at 2342.916 kb on - strand, within HP15_2224 at 2343.389 kb on + strand at 2343.409 kb on - strand at 2343.463 kb on + strand at 2343.627 kb on - strand, within HP15_2225 at 2343.639 kb on + strand, within HP15_2225 at 2344.616 kb on + strand, within HP15_2227 at 2344.646 kb on + strand, within HP15_2227 at 2344.679 kb on + strand, within HP15_2227 at 2344.712 kb on + strand, within HP15_2227 at 2344.769 kb on - strand, within HP15_2227
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 2,342,530 - -0.6 2,342,530 - +1.6 2,342,530 - -3.0 2,342,563 + HP15_2224 0.11 -0.3 2,342,676 - HP15_2224 0.24 -1.3 2,342,896 + HP15_2224 0.50 +0.4 2,342,896 + HP15_2224 0.50 -0.1 2,342,908 + HP15_2224 0.51 +0.6 2,342,916 - HP15_2224 0.52 -0.4 2,343,389 + +1.1 2,343,409 - +0.0 2,343,463 + -1.0 2,343,627 - HP15_2225 0.48 -0.4 2,343,639 + HP15_2225 0.52 -1.5 2,344,616 + HP15_2227 0.12 +0.3 2,344,646 + HP15_2227 0.22 -1.3 2,344,679 + HP15_2227 0.33 -0.0 2,344,712 + HP15_2227 0.45 +0.1 2,344,769 - HP15_2227 0.64 +0.2
Or see this region's nucleotide sequence