Strain Fitness in Marinobacter adhaerens HP15 around HP15_2225

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2224 and HP15_2225 are separated by 155 nucleotidesHP15_2225 and HP15_2226 are separated by 151 nucleotidesHP15_2226 and HP15_2227 are separated by 4 nucleotides HP15_2224: HP15_2224 - PHP C-terminal domain protein, at 2,342,472 to 2,343,326 _2224 HP15_2225: HP15_2225 - YciI-like protein, at 2,343,482 to 2,343,781 _2225 HP15_2226: HP15_2226 - SH3, type 3 domain protein, at 2,343,933 to 2,344,577 _2226 HP15_2227: HP15_2227 - protein containing type IV pilus assembly PilZ domain, at 2,344,582 to 2,344,872 _2227 Position (kb) 2343 2344Strain fitness (log2 ratio) -3 -2 -1 0 1at 2342.530 kb on - strandat 2342.530 kb on - strandat 2342.530 kb on - strandat 2342.563 kb on + strand, within HP15_2224at 2342.676 kb on - strand, within HP15_2224at 2342.896 kb on + strand, within HP15_2224at 2342.896 kb on + strand, within HP15_2224at 2342.908 kb on + strand, within HP15_2224at 2342.916 kb on - strand, within HP15_2224at 2343.389 kb on + strandat 2343.409 kb on - strandat 2343.463 kb on + strandat 2343.627 kb on - strand, within HP15_2225at 2343.639 kb on + strand, within HP15_2225at 2344.616 kb on + strand, within HP15_2227at 2344.646 kb on + strand, within HP15_2227at 2344.679 kb on + strand, within HP15_2227at 2344.712 kb on + strand, within HP15_2227at 2344.769 kb on - strand, within HP15_2227

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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2,342,530 - -0.6
2,342,530 - +1.6
2,342,530 - -3.0
2,342,563 + HP15_2224 0.11 -0.3
2,342,676 - HP15_2224 0.24 -1.3
2,342,896 + HP15_2224 0.50 +0.4
2,342,896 + HP15_2224 0.50 -0.1
2,342,908 + HP15_2224 0.51 +0.6
2,342,916 - HP15_2224 0.52 -0.4
2,343,389 + +1.1
2,343,409 - +0.0
2,343,463 + -1.0
2,343,627 - HP15_2225 0.48 -0.4
2,343,639 + HP15_2225 0.52 -1.5
2,344,616 + HP15_2227 0.12 +0.3
2,344,646 + HP15_2227 0.22 -1.3
2,344,679 + HP15_2227 0.33 -0.0
2,344,712 + HP15_2227 0.45 +0.1
2,344,769 - HP15_2227 0.64 +0.2

Or see this region's nucleotide sequence