Experiment: m.b. Furfuryl Alcohol 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c22850 and PGA1_c22860 overlap by 8 nucleotides PGA1_c22860 and PGA1_c22870 overlap by 8 nucleotides PGA1_c22870 and PGA1_c22880 overlap by 4 nucleotides PGA1_c22880 and PGA1_c22890 are separated by 5 nucleotides
PGA1_c22850: PGA1_c22850 - type IV secretion system protein VirB, at 2,367,307 to 2,369,673
_c22850
PGA1_c22860: PGA1_c22860 - hypothetical protein, at 2,369,666 to 2,369,824
_c22860
PGA1_c22870: PGA1_c22870 - lytic transglycosylase-like protein, at 2,369,817 to 2,370,965
_c22870
PGA1_c22880: PGA1_c22880 - Type IV secretion system proteins., at 2,370,962 to 2,371,741
_c22880
PGA1_c22890: PGA1_c22890 - putative type IV secretion system protein VirB8, at 2,371,747 to 2,372,397
_c22890
Position (kb)
2369
2370
2371 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2368.840 kb on - strand, within PGA1_c22850 at 2368.919 kb on + strand, within PGA1_c22850 at 2368.963 kb on - strand, within PGA1_c22850 at 2368.972 kb on - strand, within PGA1_c22850 at 2369.012 kb on + strand, within PGA1_c22850 at 2369.037 kb on + strand, within PGA1_c22850 at 2369.045 kb on - strand, within PGA1_c22850 at 2369.062 kb on + strand, within PGA1_c22850 at 2369.181 kb on - strand, within PGA1_c22850 at 2369.217 kb on + strand, within PGA1_c22850 at 2369.222 kb on + strand, within PGA1_c22850 at 2369.225 kb on - strand, within PGA1_c22850 at 2369.225 kb on - strand, within PGA1_c22850 at 2369.225 kb on - strand, within PGA1_c22850 at 2369.257 kb on - strand, within PGA1_c22850 at 2369.306 kb on - strand, within PGA1_c22850 at 2369.452 kb on + strand at 2369.487 kb on + strand at 2369.535 kb on + strand at 2369.542 kb on + strand at 2369.579 kb on + strand at 2369.582 kb on + strand at 2369.661 kb on + strand at 2369.696 kb on - strand, within PGA1_c22860 at 2369.709 kb on - strand, within PGA1_c22860 at 2369.787 kb on - strand, within PGA1_c22860 at 2369.802 kb on - strand, within PGA1_c22860 at 2369.840 kb on - strand at 2369.847 kb on + strand at 2369.847 kb on + strand at 2369.865 kb on - strand at 2369.880 kb on + strand at 2369.928 kb on + strand at 2369.936 kb on + strand, within PGA1_c22870 at 2369.992 kb on + strand, within PGA1_c22870 at 2370.000 kb on - strand, within PGA1_c22870 at 2370.007 kb on + strand, within PGA1_c22870 at 2370.170 kb on - strand, within PGA1_c22870 at 2370.170 kb on - strand, within PGA1_c22870 at 2370.170 kb on - strand, within PGA1_c22870 at 2370.356 kb on + strand, within PGA1_c22870 at 2370.362 kb on + strand, within PGA1_c22870 at 2370.373 kb on + strand, within PGA1_c22870 at 2370.376 kb on - strand, within PGA1_c22870 at 2370.378 kb on + strand, within PGA1_c22870 at 2370.378 kb on + strand, within PGA1_c22870 at 2370.378 kb on + strand, within PGA1_c22870 at 2370.378 kb on + strand, within PGA1_c22870 at 2370.378 kb on + strand, within PGA1_c22870 at 2370.378 kb on + strand, within PGA1_c22870 at 2370.378 kb on + strand, within PGA1_c22870 at 2370.378 kb on + strand, within PGA1_c22870 at 2370.378 kb on + strand, within PGA1_c22870 at 2370.386 kb on - strand, within PGA1_c22870 at 2370.386 kb on - strand, within PGA1_c22870 at 2370.525 kb on + strand, within PGA1_c22870 at 2370.525 kb on + strand, within PGA1_c22870 at 2370.571 kb on + strand, within PGA1_c22870 at 2370.571 kb on + strand, within PGA1_c22870 at 2370.571 kb on + strand, within PGA1_c22870 at 2370.579 kb on - strand, within PGA1_c22870 at 2370.579 kb on - strand, within PGA1_c22870 at 2370.579 kb on - strand, within PGA1_c22870 at 2370.579 kb on - strand, within PGA1_c22870 at 2370.581 kb on - strand, within PGA1_c22870 at 2370.675 kb on + strand, within PGA1_c22870 at 2370.685 kb on + strand, within PGA1_c22870 at 2370.693 kb on - strand, within PGA1_c22870 at 2370.701 kb on - strand, within PGA1_c22870 at 2370.765 kb on - strand, within PGA1_c22870 at 2370.775 kb on + strand, within PGA1_c22870 at 2370.857 kb on + strand at 2370.857 kb on + strand at 2370.857 kb on + strand at 2370.857 kb on + strand at 2370.865 kb on - strand at 2370.865 kb on - strand at 2370.865 kb on - strand at 2370.865 kb on - strand at 2370.865 kb on - strand at 2370.889 kb on + strand at 2370.897 kb on - strand at 2370.917 kb on + strand at 2370.991 kb on - strand at 2370.991 kb on - strand at 2371.008 kb on - strand at 2371.021 kb on - strand at 2371.022 kb on + strand at 2371.030 kb on - strand at 2371.107 kb on + strand, within PGA1_c22880 at 2371.117 kb on + strand, within PGA1_c22880 at 2371.125 kb on - strand, within PGA1_c22880 at 2371.177 kb on + strand, within PGA1_c22880 at 2371.179 kb on - strand, within PGA1_c22880 at 2371.182 kb on + strand, within PGA1_c22880 at 2371.182 kb on + strand, within PGA1_c22880 at 2371.185 kb on - strand, within PGA1_c22880 at 2371.185 kb on - strand, within PGA1_c22880 at 2371.187 kb on + strand, within PGA1_c22880 at 2371.187 kb on + strand, within PGA1_c22880 at 2371.187 kb on + strand, within PGA1_c22880 at 2371.187 kb on + strand, within PGA1_c22880 at 2371.195 kb on - strand, within PGA1_c22880 at 2371.195 kb on - strand, within PGA1_c22880 at 2371.207 kb on + strand, within PGA1_c22880 at 2371.227 kb on + strand, within PGA1_c22880 at 2371.278 kb on - strand, within PGA1_c22880 at 2371.358 kb on + strand, within PGA1_c22880 at 2371.368 kb on + strand, within PGA1_c22880 at 2371.493 kb on - strand, within PGA1_c22880 at 2371.523 kb on - strand, within PGA1_c22880 at 2371.650 kb on + strand, within PGA1_c22880 at 2371.663 kb on - strand, within PGA1_c22880 at 2371.720 kb on + strand at 2371.744 kb on + strand at 2371.744 kb on + strand at 2371.760 kb on - strand at 2371.790 kb on - strand at 2371.790 kb on - strand at 2371.790 kb on - strand at 2371.879 kb on + strand, within PGA1_c22890 at 2371.941 kb on - strand, within PGA1_c22890 at 2371.944 kb on + strand, within PGA1_c22890
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.032 vol% remove 2,368,840 - PGA1_c22850 0.65 +1.0 2,368,919 + PGA1_c22850 0.68 -0.3 2,368,963 - PGA1_c22850 0.70 -1.4 2,368,972 - PGA1_c22850 0.70 +0.5 2,369,012 + PGA1_c22850 0.72 -1.6 2,369,037 + PGA1_c22850 0.73 -0.2 2,369,045 - PGA1_c22850 0.73 +0.4 2,369,062 + PGA1_c22850 0.74 -2.4 2,369,181 - PGA1_c22850 0.79 +0.9 2,369,217 + PGA1_c22850 0.81 +0.5 2,369,222 + PGA1_c22850 0.81 +2.2 2,369,225 - PGA1_c22850 0.81 -1.0 2,369,225 - PGA1_c22850 0.81 -1.4 2,369,225 - PGA1_c22850 0.81 +0.0 2,369,257 - PGA1_c22850 0.82 +0.5 2,369,306 - PGA1_c22850 0.84 -0.8 2,369,452 + -1.0 2,369,487 + -1.5 2,369,535 + -1.6 2,369,542 + -0.7 2,369,579 + +1.4 2,369,582 + +1.1 2,369,661 + +1.6 2,369,696 - PGA1_c22860 0.19 +1.3 2,369,709 - PGA1_c22860 0.27 +0.4 2,369,787 - PGA1_c22860 0.76 -1.2 2,369,802 - PGA1_c22860 0.86 +0.8 2,369,840 - +0.4 2,369,847 + -1.5 2,369,847 + -1.8 2,369,865 - +0.5 2,369,880 + +1.8 2,369,928 + -0.5 2,369,936 + PGA1_c22870 0.10 -0.1 2,369,992 + PGA1_c22870 0.15 +2.4 2,370,000 - PGA1_c22870 0.16 +1.3 2,370,007 + PGA1_c22870 0.17 +0.6 2,370,170 - PGA1_c22870 0.31 -0.1 2,370,170 - PGA1_c22870 0.31 -0.9 2,370,170 - PGA1_c22870 0.31 -0.9 2,370,356 + PGA1_c22870 0.47 -1.8 2,370,362 + PGA1_c22870 0.47 -0.4 2,370,373 + PGA1_c22870 0.48 +1.4 2,370,376 - PGA1_c22870 0.49 +1.5 2,370,378 + PGA1_c22870 0.49 -0.4 2,370,378 + PGA1_c22870 0.49 -0.9 2,370,378 + PGA1_c22870 0.49 -0.2 2,370,378 + PGA1_c22870 0.49 -2.4 2,370,378 + PGA1_c22870 0.49 -0.6 2,370,378 + PGA1_c22870 0.49 +1.4 2,370,378 + PGA1_c22870 0.49 -0.6 2,370,378 + PGA1_c22870 0.49 -0.8 2,370,378 + PGA1_c22870 0.49 +0.6 2,370,386 - PGA1_c22870 0.50 -1.1 2,370,386 - PGA1_c22870 0.50 -0.0 2,370,525 + PGA1_c22870 0.62 +0.1 2,370,525 + PGA1_c22870 0.62 -1.9 2,370,571 + PGA1_c22870 0.66 -0.8 2,370,571 + PGA1_c22870 0.66 -2.0 2,370,571 + PGA1_c22870 0.66 +0.3 2,370,579 - PGA1_c22870 0.66 -0.2 2,370,579 - PGA1_c22870 0.66 -0.3 2,370,579 - PGA1_c22870 0.66 +0.4 2,370,579 - PGA1_c22870 0.66 -0.8 2,370,581 - PGA1_c22870 0.66 -1.5 2,370,675 + PGA1_c22870 0.75 +0.2 2,370,685 + PGA1_c22870 0.76 -0.2 2,370,693 - PGA1_c22870 0.76 -1.1 2,370,701 - PGA1_c22870 0.77 +0.1 2,370,765 - PGA1_c22870 0.83 +0.2 2,370,775 + PGA1_c22870 0.83 +0.1 2,370,857 + -0.3 2,370,857 + +0.3 2,370,857 + +0.1 2,370,857 + +0.4 2,370,865 - +0.2 2,370,865 - +0.6 2,370,865 - -0.8 2,370,865 - -0.2 2,370,865 - +0.8 2,370,889 + -0.6 2,370,897 - -0.1 2,370,917 + -0.2 2,370,991 - -0.5 2,370,991 - -0.0 2,371,008 - -0.7 2,371,021 - +0.4 2,371,022 + +0.1 2,371,030 - -0.2 2,371,107 + PGA1_c22880 0.19 +1.2 2,371,117 + PGA1_c22880 0.20 +1.1 2,371,125 - PGA1_c22880 0.21 -0.5 2,371,177 + PGA1_c22880 0.28 +0.7 2,371,179 - PGA1_c22880 0.28 -0.6 2,371,182 + PGA1_c22880 0.28 -0.2 2,371,182 + PGA1_c22880 0.28 +0.4 2,371,185 - PGA1_c22880 0.29 -0.1 2,371,185 - PGA1_c22880 0.29 -1.2 2,371,187 + PGA1_c22880 0.29 -0.8 2,371,187 + PGA1_c22880 0.29 +0.6 2,371,187 + PGA1_c22880 0.29 +0.3 2,371,187 + PGA1_c22880 0.29 -1.9 2,371,195 - PGA1_c22880 0.30 +0.8 2,371,195 - PGA1_c22880 0.30 +0.2 2,371,207 + PGA1_c22880 0.31 +0.0 2,371,227 + PGA1_c22880 0.34 +0.6 2,371,278 - PGA1_c22880 0.41 -0.5 2,371,358 + PGA1_c22880 0.51 -0.8 2,371,368 + PGA1_c22880 0.52 -0.4 2,371,493 - PGA1_c22880 0.68 +0.6 2,371,523 - PGA1_c22880 0.72 -0.6 2,371,650 + PGA1_c22880 0.88 -1.9 2,371,663 - PGA1_c22880 0.90 -0.0 2,371,720 + -0.5 2,371,744 + -0.5 2,371,744 + -0.6 2,371,760 - +0.3 2,371,790 - -1.2 2,371,790 - -1.5 2,371,790 - -1.8 2,371,879 + PGA1_c22890 0.20 +0.1 2,371,941 - PGA1_c22890 0.30 +0.6 2,371,944 + PGA1_c22890 0.30 -1.4
Or see this region's nucleotide sequence