Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2179 and HP15_2180 are separated by 190 nucleotides HP15_2180 and HP15_2181 are separated by 112 nucleotides
HP15_2179: HP15_2179 - glucose-6-phosphate 1-dehydrogenase, at 2,290,230 to 2,291,705
_2179
HP15_2180: HP15_2180 - transcriptional regulator, RpiR family protein, at 2,291,896 to 2,292,789
_2180
HP15_2181: HP15_2181 - PpiC-type peptidyl-prolyl cis-trans isomerase, at 2,292,902 to 2,294,746
_2181
Position (kb)
2291
2292
2293 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2291.063 kb on + strand, within HP15_2179 at 2291.156 kb on - strand, within HP15_2179 at 2291.156 kb on - strand, within HP15_2179 at 2291.301 kb on - strand, within HP15_2179 at 2291.405 kb on + strand, within HP15_2179 at 2291.413 kb on - strand, within HP15_2179 at 2291.575 kb on + strand at 2291.667 kb on - strand at 2291.667 kb on - strand at 2292.186 kb on - strand, within HP15_2180 at 2292.261 kb on + strand, within HP15_2180 at 2292.417 kb on + strand, within HP15_2180 at 2292.439 kb on - strand, within HP15_2180 at 2292.540 kb on + strand, within HP15_2180 at 2292.548 kb on - strand, within HP15_2180 at 2292.558 kb on + strand, within HP15_2180 at 2292.691 kb on + strand, within HP15_2180 at 2292.737 kb on + strand at 2292.759 kb on + strand at 2292.766 kb on - strand at 2292.802 kb on + strand at 2292.807 kb on + strand at 2292.869 kb on + strand at 2293.003 kb on + strand at 2293.025 kb on - strand at 2293.150 kb on + strand, within HP15_2181 at 2293.208 kb on + strand, within HP15_2181 at 2293.208 kb on + strand, within HP15_2181 at 2293.216 kb on - strand, within HP15_2181 at 2293.216 kb on - strand, within HP15_2181 at 2293.216 kb on - strand, within HP15_2181 at 2293.395 kb on + strand, within HP15_2181 at 2293.504 kb on + strand, within HP15_2181 at 2293.788 kb on + strand, within HP15_2181
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 2,291,063 + HP15_2179 0.56 +1.1 2,291,156 - HP15_2179 0.63 -0.6 2,291,156 - HP15_2179 0.63 -0.6 2,291,301 - HP15_2179 0.73 +0.5 2,291,405 + HP15_2179 0.80 -0.4 2,291,413 - HP15_2179 0.80 -0.3 2,291,575 + -0.0 2,291,667 - -0.8 2,291,667 - +0.8 2,292,186 - HP15_2180 0.32 -2.4 2,292,261 + HP15_2180 0.41 -1.3 2,292,417 + HP15_2180 0.58 -0.1 2,292,439 - HP15_2180 0.61 +0.1 2,292,540 + HP15_2180 0.72 -0.0 2,292,548 - HP15_2180 0.73 -1.1 2,292,558 + HP15_2180 0.74 -2.8 2,292,691 + HP15_2180 0.89 -0.7 2,292,737 + -0.6 2,292,759 + -1.2 2,292,766 - -1.4 2,292,802 + -1.3 2,292,807 + -1.3 2,292,869 + +0.1 2,293,003 + +0.5 2,293,025 - -0.1 2,293,150 + HP15_2181 0.13 -1.4 2,293,208 + HP15_2181 0.17 +0.0 2,293,208 + HP15_2181 0.17 +1.0 2,293,216 - HP15_2181 0.17 -2.0 2,293,216 - HP15_2181 0.17 -0.0 2,293,216 - HP15_2181 0.17 +0.3 2,293,395 + HP15_2181 0.27 +0.3 2,293,504 + HP15_2181 0.33 -1.2 2,293,788 + HP15_2181 0.48 +0.4
Or see this region's nucleotide sequence