Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c22080

Experiment: m.b. Furfuryl Alcohol 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c22060 and PGA1_c22070 are separated by 86 nucleotidesPGA1_c22070 and PGA1_c22080 are separated by 9 nucleotidesPGA1_c22080 and PGA1_c22090 are separated by 55 nucleotidesPGA1_c22090 and PGA1_c22100 are separated by 28 nucleotides PGA1_c22060: PGA1_c22060 - Putative virion core protein (lumpy skin disease virus), at 2,286,715 to 2,287,893 _c22060 PGA1_c22070: PGA1_c22070 - Cytochrome B561, at 2,287,980 to 2,288,507 _c22070 PGA1_c22080: PGA1_c22080 - RNA polymerase I-specific transcription initiation factor Rrn7., at 2,288,517 to 2,289,668 _c22080 PGA1_c22090: PGA1_c22090 - nitroreductase-like protein, at 2,289,724 to 2,290,395 _c22090 PGA1_c22100: PGA1_c22100 - D-tyrosyl-tRNA(Tyr) deacylase Dtd, at 2,290,424 to 2,290,870 _c22100 Position (kb) 2288 2289 2290Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2287.522 kb on + strand, within PGA1_c22060at 2287.782 kb on + strandat 2287.894 kb on + strandat 2287.904 kb on + strandat 2287.959 kb on - strandat 2287.967 kb on + strandat 2288.028 kb on - strandat 2288.028 kb on - strandat 2288.114 kb on + strand, within PGA1_c22070at 2288.117 kb on - strand, within PGA1_c22070at 2288.143 kb on - strand, within PGA1_c22070at 2288.163 kb on + strand, within PGA1_c22070at 2288.164 kb on - strand, within PGA1_c22070at 2288.182 kb on + strand, within PGA1_c22070at 2288.212 kb on + strand, within PGA1_c22070at 2288.276 kb on + strand, within PGA1_c22070at 2288.284 kb on - strand, within PGA1_c22070at 2288.329 kb on + strand, within PGA1_c22070at 2288.332 kb on - strand, within PGA1_c22070at 2288.394 kb on - strand, within PGA1_c22070at 2288.394 kb on - strand, within PGA1_c22070at 2288.464 kb on - strandat 2288.554 kb on + strandat 2288.626 kb on + strandat 2288.629 kb on - strandat 2288.673 kb on - strand, within PGA1_c22080at 2288.682 kb on + strand, within PGA1_c22080at 2288.716 kb on + strand, within PGA1_c22080at 2288.801 kb on - strand, within PGA1_c22080at 2288.872 kb on + strand, within PGA1_c22080at 2288.880 kb on - strand, within PGA1_c22080at 2288.984 kb on + strand, within PGA1_c22080at 2289.043 kb on + strand, within PGA1_c22080at 2289.173 kb on - strand, within PGA1_c22080at 2289.268 kb on + strand, within PGA1_c22080at 2289.277 kb on + strand, within PGA1_c22080at 2289.285 kb on - strand, within PGA1_c22080at 2289.322 kb on - strand, within PGA1_c22080at 2289.354 kb on - strand, within PGA1_c22080at 2289.354 kb on - strand, within PGA1_c22080at 2289.371 kb on - strand, within PGA1_c22080at 2289.535 kb on - strand, within PGA1_c22080at 2289.592 kb on - strandat 2289.592 kb on - strandat 2289.694 kb on - strandat 2289.721 kb on + strandat 2289.729 kb on - strandat 2289.798 kb on + strand, within PGA1_c22090at 2289.820 kb on + strand, within PGA1_c22090at 2289.820 kb on + strand, within PGA1_c22090at 2289.830 kb on + strand, within PGA1_c22090at 2289.849 kb on - strand, within PGA1_c22090at 2289.880 kb on - strand, within PGA1_c22090at 2289.882 kb on + strand, within PGA1_c22090at 2289.882 kb on + strand, within PGA1_c22090at 2289.882 kb on + strand, within PGA1_c22090at 2289.882 kb on + strand, within PGA1_c22090at 2289.882 kb on + strand, within PGA1_c22090at 2289.882 kb on + strand, within PGA1_c22090at 2289.890 kb on - strand, within PGA1_c22090at 2289.890 kb on - strand, within PGA1_c22090at 2289.890 kb on - strand, within PGA1_c22090at 2289.955 kb on + strand, within PGA1_c22090at 2289.955 kb on + strand, within PGA1_c22090at 2290.013 kb on - strand, within PGA1_c22090at 2290.023 kb on + strand, within PGA1_c22090at 2290.029 kb on + strand, within PGA1_c22090at 2290.061 kb on + strand, within PGA1_c22090at 2290.093 kb on - strand, within PGA1_c22090at 2290.103 kb on - strand, within PGA1_c22090at 2290.112 kb on + strand, within PGA1_c22090at 2290.117 kb on + strand, within PGA1_c22090at 2290.125 kb on - strand, within PGA1_c22090at 2290.125 kb on - strand, within PGA1_c22090at 2290.127 kb on + strand, within PGA1_c22090at 2290.127 kb on + strand, within PGA1_c22090at 2290.127 kb on + strand, within PGA1_c22090at 2290.127 kb on + strand, within PGA1_c22090at 2290.135 kb on - strand, within PGA1_c22090at 2290.135 kb on - strand, within PGA1_c22090at 2290.135 kb on - strand, within PGA1_c22090at 2290.135 kb on - strand, within PGA1_c22090at 2290.135 kb on - strand, within PGA1_c22090at 2290.135 kb on - strand, within PGA1_c22090at 2290.135 kb on - strand, within PGA1_c22090at 2290.135 kb on - strand, within PGA1_c22090at 2290.135 kb on - strand, within PGA1_c22090at 2290.135 kb on - strand, within PGA1_c22090at 2290.199 kb on - strand, within PGA1_c22090at 2290.271 kb on - strand, within PGA1_c22090at 2290.307 kb on + strand, within PGA1_c22090at 2290.307 kb on + strand, within PGA1_c22090at 2290.307 kb on + strand, within PGA1_c22090at 2290.307 kb on + strand, within PGA1_c22090at 2290.312 kb on + strand, within PGA1_c22090at 2290.315 kb on - strand, within PGA1_c22090at 2290.315 kb on - strand, within PGA1_c22090at 2290.315 kb on - strand, within PGA1_c22090at 2290.315 kb on - strand, within PGA1_c22090at 2290.344 kb on + strandat 2290.344 kb on + strandat 2290.372 kb on - strandat 2290.393 kb on - strandat 2290.410 kb on + strandat 2290.439 kb on - strandat 2290.439 kb on - strandat 2290.521 kb on - strand, within PGA1_c22100at 2290.526 kb on - strand, within PGA1_c22100at 2290.558 kb on - strand, within PGA1_c22100

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.032 vol%
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2,287,522 + PGA1_c22060 0.68 -2.3
2,287,782 + -1.8
2,287,894 + +0.1
2,287,904 + -1.7
2,287,959 - -0.4
2,287,967 + -0.3
2,288,028 - -1.2
2,288,028 - -1.1
2,288,114 + PGA1_c22070 0.25 -1.1
2,288,117 - PGA1_c22070 0.26 -0.4
2,288,143 - PGA1_c22070 0.31 +0.3
2,288,163 + PGA1_c22070 0.35 -0.3
2,288,164 - PGA1_c22070 0.35 -0.9
2,288,182 + PGA1_c22070 0.38 -0.6
2,288,212 + PGA1_c22070 0.44 -1.1
2,288,276 + PGA1_c22070 0.56 +1.7
2,288,284 - PGA1_c22070 0.58 -2.9
2,288,329 + PGA1_c22070 0.66 -1.6
2,288,332 - PGA1_c22070 0.67 +0.4
2,288,394 - PGA1_c22070 0.78 -0.6
2,288,394 - PGA1_c22070 0.78 +1.4
2,288,464 - -1.3
2,288,554 + +0.6
2,288,626 + -0.3
2,288,629 - -0.3
2,288,673 - PGA1_c22080 0.14 -0.9
2,288,682 + PGA1_c22080 0.14 -0.9
2,288,716 + PGA1_c22080 0.17 -0.1
2,288,801 - PGA1_c22080 0.25 +0.7
2,288,872 + PGA1_c22080 0.31 -0.4
2,288,880 - PGA1_c22080 0.32 +2.1
2,288,984 + PGA1_c22080 0.41 +0.6
2,289,043 + PGA1_c22080 0.46 +0.1
2,289,173 - PGA1_c22080 0.57 -2.5
2,289,268 + PGA1_c22080 0.65 -0.1
2,289,277 + PGA1_c22080 0.66 -0.1
2,289,285 - PGA1_c22080 0.67 -0.9
2,289,322 - PGA1_c22080 0.70 +0.7
2,289,354 - PGA1_c22080 0.73 -0.5
2,289,354 - PGA1_c22080 0.73 -0.3
2,289,371 - PGA1_c22080 0.74 -0.1
2,289,535 - PGA1_c22080 0.88 -2.6
2,289,592 - +2.1
2,289,592 - +0.1
2,289,694 - -0.1
2,289,721 + +0.5
2,289,729 - -2.3
2,289,798 + PGA1_c22090 0.11 -0.4
2,289,820 + PGA1_c22090 0.14 +1.5
2,289,820 + PGA1_c22090 0.14 -0.7
2,289,830 + PGA1_c22090 0.16 -2.7
2,289,849 - PGA1_c22090 0.19 -0.3
2,289,880 - PGA1_c22090 0.23 -1.7
2,289,882 + PGA1_c22090 0.24 +1.5
2,289,882 + PGA1_c22090 0.24 -1.8
2,289,882 + PGA1_c22090 0.24 +1.7
2,289,882 + PGA1_c22090 0.24 -0.4
2,289,882 + PGA1_c22090 0.24 -0.3
2,289,882 + PGA1_c22090 0.24 +1.5
2,289,890 - PGA1_c22090 0.25 -0.9
2,289,890 - PGA1_c22090 0.25 +1.7
2,289,890 - PGA1_c22090 0.25 -0.0
2,289,955 + PGA1_c22090 0.34 -1.6
2,289,955 + PGA1_c22090 0.34 -0.0
2,290,013 - PGA1_c22090 0.43 -0.7
2,290,023 + PGA1_c22090 0.44 -0.5
2,290,029 + PGA1_c22090 0.45 -0.4
2,290,061 + PGA1_c22090 0.50 -1.3
2,290,093 - PGA1_c22090 0.55 -0.3
2,290,103 - PGA1_c22090 0.56 -2.4
2,290,112 + PGA1_c22090 0.58 -0.3
2,290,117 + PGA1_c22090 0.58 -0.7
2,290,125 - PGA1_c22090 0.60 -0.4
2,290,125 - PGA1_c22090 0.60 -3.3
2,290,127 + PGA1_c22090 0.60 -1.0
2,290,127 + PGA1_c22090 0.60 -2.3
2,290,127 + PGA1_c22090 0.60 -0.4
2,290,127 + PGA1_c22090 0.60 -0.6
2,290,135 - PGA1_c22090 0.61 +0.5
2,290,135 - PGA1_c22090 0.61 -0.5
2,290,135 - PGA1_c22090 0.61 +1.0
2,290,135 - PGA1_c22090 0.61 +0.4
2,290,135 - PGA1_c22090 0.61 +0.9
2,290,135 - PGA1_c22090 0.61 -0.5
2,290,135 - PGA1_c22090 0.61 +0.5
2,290,135 - PGA1_c22090 0.61 -0.5
2,290,135 - PGA1_c22090 0.61 -1.3
2,290,135 - PGA1_c22090 0.61 -0.6
2,290,199 - PGA1_c22090 0.71 -0.9
2,290,271 - PGA1_c22090 0.81 -0.9
2,290,307 + PGA1_c22090 0.87 +0.3
2,290,307 + PGA1_c22090 0.87 +0.6
2,290,307 + PGA1_c22090 0.87 -1.8
2,290,307 + PGA1_c22090 0.87 +0.4
2,290,312 + PGA1_c22090 0.88 +0.4
2,290,315 - PGA1_c22090 0.88 -0.6
2,290,315 - PGA1_c22090 0.88 +0.1
2,290,315 - PGA1_c22090 0.88 -1.4
2,290,315 - PGA1_c22090 0.88 -0.3
2,290,344 + -0.1
2,290,344 + -1.9
2,290,372 - -1.3
2,290,393 - -1.3
2,290,410 + -0.3
2,290,439 - +1.7
2,290,439 - -2.4
2,290,521 - PGA1_c22100 0.22 -0.3
2,290,526 - PGA1_c22100 0.23 +0.3
2,290,558 - PGA1_c22100 0.30 +1.1

Or see this region's nucleotide sequence