Strain Fitness in Marinobacter adhaerens HP15 around HP15_2119

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2117 and HP15_2118 are separated by 19 nucleotidesHP15_2118 and HP15_2119 are separated by 45 nucleotidesHP15_2119 and HP15_2120 are separated by 4 nucleotides HP15_2117: HP15_2117 - transcriptional regulator, TetR family protein, at 2,216,395 to 2,217,039 _2117 HP15_2118: HP15_2118 - heat shock protein DnaJ domain protein, at 2,217,059 to 2,217,733 _2118 HP15_2119: HP15_2119 - polysaccharide deacetylase family protein, at 2,217,779 to 2,218,810 _2119 HP15_2120: HP15_2120 - conserved hypothetical protein, secreted, at 2,218,815 to 2,219,870 _2120 Position (kb) 2217 2218 2219Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2216.810 kb on - strand, within HP15_2117at 2216.915 kb on + strand, within HP15_2117at 2217.000 kb on + strandat 2217.000 kb on + strandat 2217.056 kb on + strandat 2217.064 kb on - strandat 2217.064 kb on - strandat 2217.167 kb on - strand, within HP15_2118at 2217.214 kb on + strand, within HP15_2118at 2217.424 kb on - strand, within HP15_2118at 2217.460 kb on + strand, within HP15_2118at 2217.801 kb on + strandat 2217.836 kb on + strandat 2217.844 kb on - strandat 2217.868 kb on - strandat 2217.870 kb on + strandat 2217.912 kb on + strand, within HP15_2119at 2217.912 kb on + strand, within HP15_2119at 2218.032 kb on + strand, within HP15_2119at 2218.207 kb on + strand, within HP15_2119at 2218.306 kb on + strand, within HP15_2119at 2218.356 kb on - strand, within HP15_2119at 2218.903 kb on - strandat 2218.921 kb on + strand, within HP15_2120at 2219.080 kb on + strand, within HP15_2120at 2219.122 kb on + strand, within HP15_2120at 2219.162 kb on + strand, within HP15_2120at 2219.281 kb on - strand, within HP15_2120at 2219.363 kb on + strand, within HP15_2120at 2219.367 kb on - strand, within HP15_2120at 2219.525 kb on - strand, within HP15_2120at 2219.529 kb on + strand, within HP15_2120at 2219.646 kb on - strand, within HP15_2120

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
remove
2,216,810 - HP15_2117 0.64 -2.4
2,216,915 + HP15_2117 0.81 -0.8
2,217,000 + +2.3
2,217,000 + -2.0
2,217,056 + -0.5
2,217,064 - +0.8
2,217,064 - +0.3
2,217,167 - HP15_2118 0.16 -1.6
2,217,214 + HP15_2118 0.23 -2.9
2,217,424 - HP15_2118 0.54 -0.4
2,217,460 + HP15_2118 0.59 -0.5
2,217,801 + -1.4
2,217,836 + +0.6
2,217,844 - -0.6
2,217,868 - -0.1
2,217,870 + +1.8
2,217,912 + HP15_2119 0.13 -1.3
2,217,912 + HP15_2119 0.13 -0.2
2,218,032 + HP15_2119 0.25 -1.0
2,218,207 + HP15_2119 0.41 -0.7
2,218,306 + HP15_2119 0.51 -0.3
2,218,356 - HP15_2119 0.56 -0.9
2,218,903 - +1.0
2,218,921 + HP15_2120 0.10 -1.3
2,219,080 + HP15_2120 0.25 -0.4
2,219,122 + HP15_2120 0.29 +1.0
2,219,162 + HP15_2120 0.33 -0.6
2,219,281 - HP15_2120 0.44 -0.4
2,219,363 + HP15_2120 0.52 -2.6
2,219,367 - HP15_2120 0.52 -2.2
2,219,525 - HP15_2120 0.67 +1.8
2,219,529 + HP15_2120 0.68 +1.0
2,219,646 - HP15_2120 0.79 +0.2

Or see this region's nucleotide sequence