Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c21430

Experiment: m.b. Furfuryl Alcohol 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c21420 and PGA1_c21430 are separated by 208 nucleotidesPGA1_c21430 and PGA1_c21440 are separated by 8 nucleotidesPGA1_c21440 and PGA1_c21450 are separated by 47 nucleotides PGA1_c21420: PGA1_c21420 - prolyl-tRNA synthetase ProS, at 2,219,224 to 2,220,579 _c21420 PGA1_c21430: PGA1_c21430 - putative permease, at 2,220,788 to 2,221,855 _c21430 PGA1_c21440: PGA1_c21440 - hypothetical protein, at 2,221,864 to 2,222,634 _c21440 PGA1_c21450: PGA1_c21450 - phosphatase-like protein, at 2,222,682 to 2,224,226 _c21450 Position (kb) 2220 2221 2222Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2220.622 kb on - strandat 2220.661 kb on - strandat 2220.669 kb on + strandat 2220.677 kb on - strandat 2220.700 kb on + strandat 2220.700 kb on + strandat 2220.708 kb on - strandat 2220.760 kb on + strandat 2220.778 kb on + strandat 2220.778 kb on + strandat 2220.792 kb on - strandat 2221.039 kb on - strand, within PGA1_c21430at 2221.077 kb on - strand, within PGA1_c21430at 2221.153 kb on - strand, within PGA1_c21430at 2221.166 kb on + strand, within PGA1_c21430at 2221.174 kb on - strand, within PGA1_c21430at 2221.186 kb on + strand, within PGA1_c21430at 2221.319 kb on - strand, within PGA1_c21430at 2221.339 kb on + strand, within PGA1_c21430at 2221.379 kb on + strand, within PGA1_c21430at 2221.410 kb on + strand, within PGA1_c21430at 2221.416 kb on + strand, within PGA1_c21430at 2221.440 kb on - strand, within PGA1_c21430at 2221.448 kb on - strand, within PGA1_c21430at 2221.453 kb on - strand, within PGA1_c21430at 2221.480 kb on - strand, within PGA1_c21430at 2221.486 kb on - strand, within PGA1_c21430at 2221.539 kb on - strand, within PGA1_c21430at 2221.539 kb on - strand, within PGA1_c21430at 2221.546 kb on + strand, within PGA1_c21430at 2221.570 kb on + strand, within PGA1_c21430at 2221.578 kb on - strand, within PGA1_c21430at 2221.702 kb on + strand, within PGA1_c21430at 2221.726 kb on + strand, within PGA1_c21430at 2221.770 kb on + strandat 2221.770 kb on + strandat 2221.770 kb on + strandat 2221.778 kb on - strandat 2221.805 kb on + strandat 2221.813 kb on - strandat 2221.828 kb on + strandat 2221.836 kb on - strandat 2221.836 kb on - strandat 2221.843 kb on - strandat 2221.862 kb on - strandat 2222.040 kb on + strand, within PGA1_c21440at 2222.165 kb on - strand, within PGA1_c21440at 2222.262 kb on + strand, within PGA1_c21440at 2222.268 kb on + strand, within PGA1_c21440at 2222.650 kb on + strandat 2222.740 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.032 vol%
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2,220,622 - +0.4
2,220,661 - +0.1
2,220,669 + -1.1
2,220,677 - -0.8
2,220,700 + +0.4
2,220,700 + +0.5
2,220,708 - -0.6
2,220,760 + -0.3
2,220,778 + -2.1
2,220,778 + +1.1
2,220,792 - +0.3
2,221,039 - PGA1_c21430 0.24 -2.4
2,221,077 - PGA1_c21430 0.27 +2.1
2,221,153 - PGA1_c21430 0.34 -0.7
2,221,166 + PGA1_c21430 0.35 +0.5
2,221,174 - PGA1_c21430 0.36 -0.2
2,221,186 + PGA1_c21430 0.37 -2.0
2,221,319 - PGA1_c21430 0.50 -1.2
2,221,339 + PGA1_c21430 0.52 +1.0
2,221,379 + PGA1_c21430 0.55 -0.2
2,221,410 + PGA1_c21430 0.58 +1.3
2,221,416 + PGA1_c21430 0.59 +0.2
2,221,440 - PGA1_c21430 0.61 +0.7
2,221,448 - PGA1_c21430 0.62 -0.7
2,221,453 - PGA1_c21430 0.62 -0.5
2,221,480 - PGA1_c21430 0.65 +0.6
2,221,486 - PGA1_c21430 0.65 -0.7
2,221,539 - PGA1_c21430 0.70 +0.1
2,221,539 - PGA1_c21430 0.70 +1.9
2,221,546 + PGA1_c21430 0.71 +0.1
2,221,570 + PGA1_c21430 0.73 -3.1
2,221,578 - PGA1_c21430 0.74 +0.4
2,221,702 + PGA1_c21430 0.86 -0.9
2,221,726 + PGA1_c21430 0.88 -3.0
2,221,770 + +0.4
2,221,770 + -0.5
2,221,770 + -1.3
2,221,778 - -0.4
2,221,805 + +0.1
2,221,813 - -1.2
2,221,828 + -0.6
2,221,836 - -1.7
2,221,836 - -1.6
2,221,843 - -1.1
2,221,862 - +0.5
2,222,040 + PGA1_c21440 0.23 -2.1
2,222,165 - PGA1_c21440 0.39 -2.1
2,222,262 + PGA1_c21440 0.52 -2.4
2,222,268 + PGA1_c21440 0.52 -0.9
2,222,650 + -0.7
2,222,740 - -1.9

Or see this region's nucleotide sequence