Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c21410

Experiment: m.b. Furfuryl Alcohol 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c21390 and PGA1_c21400 are separated by 10 nucleotidesPGA1_c21400 and PGA1_c21410 overlap by 8 nucleotidesPGA1_c21410 and PGA1_c21420 are separated by 170 nucleotides PGA1_c21390: PGA1_c21390 - hypothetical protein, at 2,216,358 to 2,217,044 _c21390 PGA1_c21400: PGA1_c21400 - lipoprotein-releasing system ATP-binding protein LolD, at 2,217,055 to 2,217,768 _c21400 PGA1_c21410: PGA1_c21410 - lipoprotein-releasing system transmembrane protein LolC, at 2,217,761 to 2,219,053 _c21410 PGA1_c21420: PGA1_c21420 - prolyl-tRNA synthetase ProS, at 2,219,224 to 2,220,579 _c21420 Position (kb) 2217 2218 2219 2220Strain fitness (log2 ratio) -1 0 1at 2216.794 kb on + strand, within PGA1_c21390at 2216.814 kb on - strand, within PGA1_c21390at 2216.857 kb on + strand, within PGA1_c21390at 2216.862 kb on - strand, within PGA1_c21390at 2216.965 kb on + strand, within PGA1_c21390at 2216.965 kb on + strand, within PGA1_c21390at 2216.968 kb on - strand, within PGA1_c21390at 2216.972 kb on - strand, within PGA1_c21390at 2216.973 kb on - strand, within PGA1_c21390at 2217.073 kb on - strandat 2217.073 kb on - strandat 2219.090 kb on - strandat 2219.110 kb on + strandat 2219.275 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.032 vol%
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2,216,794 + PGA1_c21390 0.63 -0.0
2,216,814 - PGA1_c21390 0.66 -0.3
2,216,857 + PGA1_c21390 0.73 -0.3
2,216,862 - PGA1_c21390 0.73 -0.6
2,216,965 + PGA1_c21390 0.88 -0.1
2,216,965 + PGA1_c21390 0.88 -0.3
2,216,968 - PGA1_c21390 0.89 +1.1
2,216,972 - PGA1_c21390 0.89 -0.2
2,216,973 - PGA1_c21390 0.90 +0.1
2,217,073 - +1.4
2,217,073 - +0.7
2,219,090 - -1.7
2,219,110 + +0.1
2,219,275 - -0.6

Or see this region's nucleotide sequence