Strain Fitness in Marinobacter adhaerens HP15 around HP15_2001

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1999 and HP15_2000 are separated by 159 nucleotidesHP15_2000 and HP15_2001 are separated by 70 nucleotidesHP15_2001 and HP15_2002 are separated by 12 nucleotidesHP15_2002 and HP15_2003 overlap by 4 nucleotidesHP15_2003 and HP15_2004 overlap by 1 nucleotidesHP15_2004 and HP15_2005 are separated by 34 nucleotides HP15_1999: HP15_1999 - hypothetical protein, at 2,104,768 to 2,105,268 _1999 HP15_2000: HP15_2000 - conserved hypothetical protein, at 2,105,428 to 2,105,706 _2000 HP15_2001: HP15_2001 - hypothetical protein, at 2,105,777 to 2,106,061 _2001 HP15_2002: HP15_2002 - conserved hypothetical protein, at 2,106,074 to 2,106,415 _2002 HP15_2003: HP15_2003 - hypothetical protein, at 2,106,412 to 2,106,843 _2003 HP15_2004: HP15_2004 - membrane or secreted protein, at 2,106,843 to 2,106,971 _2004 HP15_2005: HP15_2005 - hypothetical protein, at 2,107,006 to 2,107,449 _2005 Position (kb) 2105 2106 2107Strain fitness (log2 ratio) -2 -1 0 1at 2104.854 kb on - strand, within HP15_1999at 2104.924 kb on - strand, within HP15_1999at 2104.975 kb on - strand, within HP15_1999at 2105.051 kb on - strand, within HP15_1999at 2105.051 kb on - strand, within HP15_1999at 2105.051 kb on - strand, within HP15_1999at 2105.051 kb on - strand, within HP15_1999at 2105.115 kb on - strand, within HP15_1999at 2105.134 kb on - strand, within HP15_1999at 2105.277 kb on - strandat 2105.542 kb on - strand, within HP15_2000at 2105.542 kb on - strand, within HP15_2000at 2105.634 kb on - strand, within HP15_2000at 2105.940 kb on - strand, within HP15_2001at 2105.953 kb on - strand, within HP15_2001at 2106.089 kb on - strandat 2106.277 kb on + strand, within HP15_2002at 2106.295 kb on + strand, within HP15_2002at 2106.365 kb on + strand, within HP15_2002at 2106.416 kb on - strandat 2106.650 kb on - strand, within HP15_2003at 2106.741 kb on - strand, within HP15_2003at 2106.966 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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2,104,854 - HP15_1999 0.17 -1.6
2,104,924 - HP15_1999 0.31 +0.2
2,104,975 - HP15_1999 0.41 -0.4
2,105,051 - HP15_1999 0.56 -0.0
2,105,051 - HP15_1999 0.56 -0.5
2,105,051 - HP15_1999 0.56 -1.4
2,105,051 - HP15_1999 0.56 -1.1
2,105,115 - HP15_1999 0.69 +1.1
2,105,134 - HP15_1999 0.73 -0.3
2,105,277 - +0.1
2,105,542 - HP15_2000 0.41 +1.2
2,105,542 - HP15_2000 0.41 -0.8
2,105,634 - HP15_2000 0.74 +1.5
2,105,940 - HP15_2001 0.57 +0.5
2,105,953 - HP15_2001 0.62 -2.2
2,106,089 - -0.4
2,106,277 + HP15_2002 0.59 -1.6
2,106,295 + HP15_2002 0.65 -1.8
2,106,365 + HP15_2002 0.85 -0.2
2,106,416 - +0.2
2,106,650 - HP15_2003 0.55 -0.3
2,106,741 - HP15_2003 0.76 -0.3
2,106,966 + -0.9

Or see this region's nucleotide sequence