Experiment: m.b. Furfuryl Alcohol 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02020 and PGA1_c02030 are separated by 218 nucleotides PGA1_c02030 and PGA1_c02040 overlap by 4 nucleotides PGA1_c02040 and PGA1_c02050 are separated by 199 nucleotides
PGA1_c02020: PGA1_c02020 - Predicted metal-binding protein, at 185,235 to 185,693
_c02020
PGA1_c02030: PGA1_c02030 - phosphoglycerate mutase-like protein, at 185,912 to 186,409
_c02030
PGA1_c02040: PGA1_c02040 - hypothetical protein, at 186,406 to 187,149
_c02040
PGA1_c02050: PGA1_c02050 - acetylglutamate kinase ArgB, at 187,349 to 188,209
_c02050
Position (kb) 186
187
188 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 185.438 kb on + strand, within PGA1_c02020 at 185.438 kb on + strand, within PGA1_c02020 at 185.438 kb on - strand, within PGA1_c02020 at 185.446 kb on - strand, within PGA1_c02020 at 185.537 kb on + strand, within PGA1_c02020 at 185.545 kb on - strand, within PGA1_c02020 at 185.553 kb on - strand, within PGA1_c02020 at 185.688 kb on + strand at 185.717 kb on + strand at 185.717 kb on + strand at 185.725 kb on - strand at 185.736 kb on - strand at 185.911 kb on - strand at 185.913 kb on - strand at 186.010 kb on + strand, within PGA1_c02030 at 186.124 kb on + strand, within PGA1_c02030 at 186.246 kb on - strand, within PGA1_c02030 at 186.353 kb on + strand, within PGA1_c02030 at 186.391 kb on + strand at 186.457 kb on + strand at 186.527 kb on + strand, within PGA1_c02040 at 186.535 kb on - strand, within PGA1_c02040 at 186.610 kb on + strand, within PGA1_c02040 at 186.610 kb on + strand, within PGA1_c02040 at 186.610 kb on + strand, within PGA1_c02040 at 186.618 kb on - strand, within PGA1_c02040 at 186.618 kb on - strand, within PGA1_c02040 at 186.618 kb on - strand, within PGA1_c02040 at 186.625 kb on + strand, within PGA1_c02040 at 186.651 kb on - strand, within PGA1_c02040 at 186.651 kb on - strand, within PGA1_c02040 at 186.656 kb on - strand, within PGA1_c02040 at 186.769 kb on - strand, within PGA1_c02040 at 186.779 kb on - strand, within PGA1_c02040 at 186.871 kb on + strand, within PGA1_c02040 at 186.903 kb on + strand, within PGA1_c02040 at 186.903 kb on + strand, within PGA1_c02040 at 186.997 kb on - strand, within PGA1_c02040 at 186.999 kb on + strand, within PGA1_c02040 at 187.005 kb on + strand, within PGA1_c02040 at 187.007 kb on + strand, within PGA1_c02040 at 187.013 kb on - strand, within PGA1_c02040 at 187.144 kb on + strand at 187.193 kb on + strand at 187.193 kb on + strand at 187.193 kb on + strand at 187.193 kb on - strand at 187.225 kb on + strand at 187.244 kb on - strand at 187.347 kb on + strand at 187.355 kb on - strand at 187.355 kb on - strand at 187.446 kb on + strand, within PGA1_c02050 at 187.454 kb on - strand, within PGA1_c02050 at 187.707 kb on + strand, within PGA1_c02050 at 187.707 kb on + strand, within PGA1_c02050 at 187.772 kb on + strand, within PGA1_c02050 at 187.897 kb on - strand, within PGA1_c02050 at 188.020 kb on + strand, within PGA1_c02050 at 188.028 kb on - strand, within PGA1_c02050 at 188.033 kb on - strand, within PGA1_c02050 at 188.064 kb on + strand, within PGA1_c02050
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.032 vol% remove 185,438 + PGA1_c02020 0.44 +0.6 185,438 + PGA1_c02020 0.44 +1.8 185,438 - PGA1_c02020 0.44 -1.8 185,446 - PGA1_c02020 0.46 -2.7 185,537 + PGA1_c02020 0.66 +0.5 185,545 - PGA1_c02020 0.68 -1.6 185,553 - PGA1_c02020 0.69 +0.5 185,688 + -0.6 185,717 + +0.4 185,717 + -0.4 185,725 - -1.5 185,736 - +0.4 185,911 - -1.3 185,913 - -0.4 186,010 + PGA1_c02030 0.20 +1.4 186,124 + PGA1_c02030 0.43 -1.3 186,246 - PGA1_c02030 0.67 +0.1 186,353 + PGA1_c02030 0.89 -0.8 186,391 + -1.2 186,457 + +0.0 186,527 + PGA1_c02040 0.16 +0.2 186,535 - PGA1_c02040 0.17 -1.7 186,610 + PGA1_c02040 0.27 -0.8 186,610 + PGA1_c02040 0.27 +0.2 186,610 + PGA1_c02040 0.27 -0.3 186,618 - PGA1_c02040 0.28 -1.2 186,618 - PGA1_c02040 0.28 +0.9 186,618 - PGA1_c02040 0.28 -0.2 186,625 + PGA1_c02040 0.29 +0.0 186,651 - PGA1_c02040 0.33 -2.1 186,651 - PGA1_c02040 0.33 -0.2 186,656 - PGA1_c02040 0.34 -0.6 186,769 - PGA1_c02040 0.49 -1.3 186,779 - PGA1_c02040 0.50 +0.7 186,871 + PGA1_c02040 0.62 -0.9 186,903 + PGA1_c02040 0.67 -0.4 186,903 + PGA1_c02040 0.67 -0.3 186,997 - PGA1_c02040 0.79 -0.7 186,999 + PGA1_c02040 0.80 -0.3 187,005 + PGA1_c02040 0.81 -0.3 187,007 + PGA1_c02040 0.81 -1.7 187,013 - PGA1_c02040 0.82 -3.7 187,144 + -0.1 187,193 + +1.6 187,193 + -1.3 187,193 + +0.3 187,193 - -0.1 187,225 + -1.1 187,244 - +1.5 187,347 + -0.8 187,355 - -0.2 187,355 - +0.0 187,446 + PGA1_c02050 0.11 -1.0 187,454 - PGA1_c02050 0.12 -0.3 187,707 + PGA1_c02050 0.42 -1.0 187,707 + PGA1_c02050 0.42 -3.5 187,772 + PGA1_c02050 0.49 -1.0 187,897 - PGA1_c02050 0.64 -1.6 188,020 + PGA1_c02050 0.78 -2.4 188,028 - PGA1_c02050 0.79 -1.8 188,033 - PGA1_c02050 0.79 -0.3 188,064 + PGA1_c02050 0.83 -1.1
Or see this region's nucleotide sequence