Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1835 and HP15_1836 are separated by 3 nucleotides HP15_1836 and HP15_1837 overlap by 1 nucleotides HP15_1837 and HP15_1838 are separated by 143 nucleotides
HP15_1835: HP15_1835 - transcriptional regulator LysR family protein, at 1,935,204 to 1,936,154
_1835
HP15_1836: HP15_1836 - major facilitator superfamily MFS_1, at 1,936,158 to 1,936,697
_1836
HP15_1837: HP15_1837 - major facilitator superfamily MFS_1, at 1,936,697 to 1,937,320
_1837
HP15_1838: HP15_1838 - chorismate synthase, at 1,937,464 to 1,938,558
_1838
Position (kb)
1936
1937
1938 Strain fitness (log2 ratio)
-1
0
1
2 at 1935.841 kb on + strand, within HP15_1835 at 1935.892 kb on - strand, within HP15_1835 at 1935.979 kb on + strand, within HP15_1835 at 1935.989 kb on + strand, within HP15_1835 at 1935.997 kb on - strand, within HP15_1835 at 1935.997 kb on - strand, within HP15_1835 at 1935.997 kb on - strand, within HP15_1835 at 1936.100 kb on + strand at 1936.126 kb on + strand at 1936.167 kb on + strand at 1936.173 kb on + strand at 1936.255 kb on + strand, within HP15_1836 at 1936.255 kb on + strand, within HP15_1836 at 1936.263 kb on - strand, within HP15_1836 at 1936.329 kb on + strand, within HP15_1836 at 1936.340 kb on + strand, within HP15_1836 at 1936.380 kb on + strand, within HP15_1836 at 1936.627 kb on - strand, within HP15_1836 at 1936.908 kb on - strand, within HP15_1837 at 1937.102 kb on - strand, within HP15_1837 at 1937.132 kb on + strand, within HP15_1837
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 1,935,841 + HP15_1835 0.67 +0.2 1,935,892 - HP15_1835 0.72 -0.3 1,935,979 + HP15_1835 0.81 -0.1 1,935,989 + HP15_1835 0.83 -0.2 1,935,997 - HP15_1835 0.83 -0.2 1,935,997 - HP15_1835 0.83 +2.5 1,935,997 - HP15_1835 0.83 +0.2 1,936,100 + -0.1 1,936,126 + +1.7 1,936,167 + -0.9 1,936,173 + +0.2 1,936,255 + HP15_1836 0.18 -0.3 1,936,255 + HP15_1836 0.18 +1.2 1,936,263 - HP15_1836 0.19 +0.3 1,936,329 + HP15_1836 0.32 +0.1 1,936,340 + HP15_1836 0.34 -0.3 1,936,380 + HP15_1836 0.41 -0.0 1,936,627 - HP15_1836 0.87 -1.0 1,936,908 - HP15_1837 0.34 -1.7 1,937,102 - HP15_1837 0.65 -0.2 1,937,132 + HP15_1837 0.70 -1.5
Or see this region's nucleotide sequence