Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1740 and HP15_1741 are separated by 38 nucleotides HP15_1741 and HP15_1742 are separated by 245 nucleotides HP15_1742 and HP15_1743 are separated by 182 nucleotides
HP15_1740: HP15_1740 - enoyl-CoA hydratase/isomerase, at 1,837,379 to 1,838,182
_1740
HP15_1741: HP15_1741 - hypothetical protein, at 1,838,221 to 1,838,583
_1741
HP15_1742: HP15_1742 - secreted protein, at 1,838,829 to 1,839,464
_1742
HP15_1743: HP15_1743 - conserved hypothetical protein, at 1,839,647 to 1,842,152
_1743
Position (kb)
1838
1839
1840 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1837.890 kb on + strand, within HP15_1740 at 1837.954 kb on - strand, within HP15_1740 at 1838.075 kb on - strand, within HP15_1740 at 1838.075 kb on - strand, within HP15_1740 at 1838.112 kb on - strand at 1838.127 kb on + strand at 1838.135 kb on - strand at 1838.368 kb on - strand, within HP15_1741 at 1838.450 kb on - strand, within HP15_1741 at 1838.614 kb on + strand at 1838.617 kb on - strand at 1838.642 kb on - strand at 1838.658 kb on + strand at 1838.790 kb on + strand at 1838.940 kb on - strand, within HP15_1742 at 1838.940 kb on - strand, within HP15_1742 at 1839.208 kb on - strand, within HP15_1742 at 1839.220 kb on + strand, within HP15_1742 at 1839.340 kb on + strand, within HP15_1742 at 1839.376 kb on + strand, within HP15_1742 at 1839.417 kb on - strand at 1839.425 kb on + strand at 1839.433 kb on - strand at 1839.507 kb on + strand at 1839.525 kb on - strand at 1839.562 kb on + strand at 1839.562 kb on + strand at 1839.570 kb on - strand at 1839.570 kb on - strand at 1839.606 kb on + strand at 1839.606 kb on + strand at 1839.614 kb on - strand at 1839.614 kb on - strand at 1839.618 kb on + strand at 1839.628 kb on - strand at 1839.765 kb on + strand at 1839.784 kb on + strand at 1839.826 kb on + strand at 1839.834 kb on - strand at 1839.866 kb on - strand at 1839.960 kb on - strand, within HP15_1743 at 1839.960 kb on - strand, within HP15_1743 at 1840.113 kb on - strand, within HP15_1743 at 1840.124 kb on - strand, within HP15_1743 at 1840.361 kb on + strand, within HP15_1743
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 1,837,890 + HP15_1740 0.64 -2.3 1,837,954 - HP15_1740 0.72 +1.1 1,838,075 - HP15_1740 0.87 +0.3 1,838,075 - HP15_1740 0.87 +0.1 1,838,112 - -2.2 1,838,127 + +0.8 1,838,135 - +1.2 1,838,368 - HP15_1741 0.40 +2.2 1,838,450 - HP15_1741 0.63 -0.4 1,838,614 + -0.0 1,838,617 - -1.4 1,838,642 - -0.0 1,838,658 + -1.4 1,838,790 + -0.7 1,838,940 - HP15_1742 0.17 +0.8 1,838,940 - HP15_1742 0.17 -0.3 1,839,208 - HP15_1742 0.60 -0.4 1,839,220 + HP15_1742 0.61 -0.2 1,839,340 + HP15_1742 0.80 +0.7 1,839,376 + HP15_1742 0.86 +2.3 1,839,417 - +0.2 1,839,425 + +0.3 1,839,433 - +1.0 1,839,507 + -0.2 1,839,525 - -0.7 1,839,562 + -0.5 1,839,562 + +2.8 1,839,570 - -0.6 1,839,570 - +0.7 1,839,606 + +0.2 1,839,606 + -0.4 1,839,614 - -2.2 1,839,614 - +1.8 1,839,618 + -1.7 1,839,628 - +0.6 1,839,765 + -0.7 1,839,784 + -1.2 1,839,826 + +0.3 1,839,834 - +0.3 1,839,866 - +0.5 1,839,960 - HP15_1743 0.12 +0.2 1,839,960 - HP15_1743 0.12 +0.4 1,840,113 - HP15_1743 0.19 -0.6 1,840,124 - HP15_1743 0.19 -1.3 1,840,361 + HP15_1743 0.28 -0.0
Or see this region's nucleotide sequence