Experiment: m.b. Furfuryl Alcohol 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c17820 and PGA1_c17830 are separated by 48 nucleotides PGA1_c17830 and PGA1_c17840 are separated by 35 nucleotides PGA1_c17840 and PGA1_c17850 overlap by 8 nucleotides PGA1_c17850 and PGA1_c17860 are separated by 193 nucleotides
PGA1_c17820: PGA1_c17820 - gene transfer agent major capsid protein, at 1,862,932 to 1,864,116
_c17820
PGA1_c17830: PGA1_c17830 - putative gene transfer agent prohead protease, at 1,864,165 to 1,864,782
_c17830
PGA1_c17840: PGA1_c17840 - hypothetical protein, at 1,864,818 to 1,865,036
_c17840
PGA1_c17850: PGA1_c17850 - putative gene transfer agent portal protein, at 1,865,029 to 1,866,222
_c17850
PGA1_c17860: PGA1_c17860 - putative gene transfer agent large terminase, at 1,866,416 to 1,867,708
_c17860
Position (kb)
1865
1866
1867 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1864.083 kb on - strand at 1864.099 kb on + strand at 1864.107 kb on - strand at 1864.161 kb on + strand at 1864.176 kb on - strand at 1864.177 kb on + strand at 1864.210 kb on - strand at 1864.254 kb on - strand, within PGA1_c17830 at 1864.283 kb on + strand, within PGA1_c17830 at 1864.445 kb on + strand, within PGA1_c17830 at 1864.547 kb on + strand, within PGA1_c17830 at 1864.611 kb on + strand, within PGA1_c17830 at 1864.701 kb on - strand, within PGA1_c17830 at 1864.726 kb on + strand at 1864.872 kb on + strand, within PGA1_c17840 at 1864.994 kb on + strand, within PGA1_c17840 at 1865.198 kb on - strand, within PGA1_c17850 at 1865.244 kb on - strand, within PGA1_c17850 at 1865.337 kb on + strand, within PGA1_c17850 at 1865.345 kb on - strand, within PGA1_c17850 at 1865.529 kb on + strand, within PGA1_c17850 at 1865.538 kb on - strand, within PGA1_c17850 at 1865.538 kb on - strand, within PGA1_c17850 at 1865.549 kb on + strand, within PGA1_c17850 at 1865.557 kb on - strand, within PGA1_c17850 at 1865.557 kb on - strand, within PGA1_c17850 at 1865.564 kb on + strand, within PGA1_c17850 at 1865.595 kb on + strand, within PGA1_c17850 at 1865.603 kb on - strand, within PGA1_c17850 at 1865.603 kb on - strand, within PGA1_c17850 at 1865.618 kb on - strand, within PGA1_c17850 at 1865.682 kb on + strand, within PGA1_c17850 at 1865.682 kb on + strand, within PGA1_c17850 at 1865.727 kb on + strand, within PGA1_c17850 at 1865.796 kb on - strand, within PGA1_c17850 at 1865.803 kb on + strand, within PGA1_c17850 at 1865.935 kb on + strand, within PGA1_c17850 at 1865.935 kb on + strand, within PGA1_c17850 at 1865.943 kb on - strand, within PGA1_c17850 at 1865.943 kb on - strand, within PGA1_c17850 at 1865.943 kb on - strand, within PGA1_c17850 at 1865.945 kb on + strand, within PGA1_c17850 at 1865.945 kb on + strand, within PGA1_c17850 at 1866.218 kb on - strand at 1866.219 kb on + strand at 1866.231 kb on + strand at 1866.239 kb on - strand at 1866.269 kb on - strand at 1866.326 kb on + strand at 1866.436 kb on - strand at 1866.480 kb on + strand at 1866.480 kb on + strand at 1866.480 kb on + strand at 1866.480 kb on + strand at 1866.488 kb on - strand at 1866.488 kb on - strand at 1866.488 kb on - strand at 1866.488 kb on - strand at 1866.605 kb on - strand, within PGA1_c17860 at 1866.633 kb on + strand, within PGA1_c17860 at 1866.641 kb on - strand, within PGA1_c17860 at 1866.647 kb on + strand, within PGA1_c17860 at 1866.793 kb on + strand, within PGA1_c17860 at 1866.801 kb on - strand, within PGA1_c17860 at 1866.823 kb on + strand, within PGA1_c17860 at 1866.823 kb on + strand, within PGA1_c17860 at 1866.847 kb on - strand, within PGA1_c17860 at 1866.872 kb on - strand, within PGA1_c17860 at 1866.941 kb on + strand, within PGA1_c17860 at 1866.956 kb on - strand, within PGA1_c17860 at 1866.997 kb on - strand, within PGA1_c17860 at 1867.075 kb on + strand, within PGA1_c17860 at 1867.130 kb on + strand, within PGA1_c17860 at 1867.138 kb on - strand, within PGA1_c17860 at 1867.138 kb on - strand, within PGA1_c17860 at 1867.140 kb on + strand, within PGA1_c17860 at 1867.140 kb on + strand, within PGA1_c17860 at 1867.140 kb on + strand, within PGA1_c17860 at 1867.140 kb on + strand, within PGA1_c17860 at 1867.140 kb on + strand, within PGA1_c17860 at 1867.148 kb on - strand, within PGA1_c17860 at 1867.148 kb on - strand, within PGA1_c17860 at 1867.205 kb on - strand, within PGA1_c17860
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.032 vol% remove 1,864,083 - -1.3 1,864,099 + -0.6 1,864,107 - -0.2 1,864,161 + -0.9 1,864,176 - +0.2 1,864,177 + -1.3 1,864,210 - -0.3 1,864,254 - PGA1_c17830 0.14 +1.7 1,864,283 + PGA1_c17830 0.19 -1.9 1,864,445 + PGA1_c17830 0.45 -0.1 1,864,547 + PGA1_c17830 0.62 -0.1 1,864,611 + PGA1_c17830 0.72 +1.0 1,864,701 - PGA1_c17830 0.87 -1.5 1,864,726 + -2.1 1,864,872 + PGA1_c17840 0.25 +1.7 1,864,994 + PGA1_c17840 0.80 -3.0 1,865,198 - PGA1_c17850 0.14 -2.1 1,865,244 - PGA1_c17850 0.18 -0.3 1,865,337 + PGA1_c17850 0.26 +0.1 1,865,345 - PGA1_c17850 0.26 +1.2 1,865,529 + PGA1_c17850 0.42 +0.0 1,865,538 - PGA1_c17850 0.43 -1.3 1,865,538 - PGA1_c17850 0.43 -0.9 1,865,549 + PGA1_c17850 0.44 -1.6 1,865,557 - PGA1_c17850 0.44 +0.7 1,865,557 - PGA1_c17850 0.44 +0.7 1,865,564 + PGA1_c17850 0.45 -0.9 1,865,595 + PGA1_c17850 0.47 -1.6 1,865,603 - PGA1_c17850 0.48 -0.3 1,865,603 - PGA1_c17850 0.48 -0.8 1,865,618 - PGA1_c17850 0.49 -0.9 1,865,682 + PGA1_c17850 0.55 -1.3 1,865,682 + PGA1_c17850 0.55 +0.1 1,865,727 + PGA1_c17850 0.58 -2.5 1,865,796 - PGA1_c17850 0.64 -1.4 1,865,803 + PGA1_c17850 0.65 +0.7 1,865,935 + PGA1_c17850 0.76 -0.0 1,865,935 + PGA1_c17850 0.76 +0.3 1,865,943 - PGA1_c17850 0.77 -1.5 1,865,943 - PGA1_c17850 0.77 -0.8 1,865,943 - PGA1_c17850 0.77 -1.0 1,865,945 + PGA1_c17850 0.77 +1.0 1,865,945 + PGA1_c17850 0.77 -1.3 1,866,218 - -0.7 1,866,219 + +0.4 1,866,231 + -0.5 1,866,239 - -2.1 1,866,269 - +0.8 1,866,326 + -0.7 1,866,436 - -0.6 1,866,480 + -0.5 1,866,480 + +0.3 1,866,480 + -0.9 1,866,480 + -2.1 1,866,488 - +1.8 1,866,488 - -1.9 1,866,488 - -0.2 1,866,488 - -1.3 1,866,605 - PGA1_c17860 0.15 -1.2 1,866,633 + PGA1_c17860 0.17 -2.8 1,866,641 - PGA1_c17860 0.17 +0.4 1,866,647 + PGA1_c17860 0.18 -0.3 1,866,793 + PGA1_c17860 0.29 -1.3 1,866,801 - PGA1_c17860 0.30 -2.9 1,866,823 + PGA1_c17860 0.31 -1.0 1,866,823 + PGA1_c17860 0.31 -2.1 1,866,847 - PGA1_c17860 0.33 +1.1 1,866,872 - PGA1_c17860 0.35 +0.1 1,866,941 + PGA1_c17860 0.41 +0.1 1,866,956 - PGA1_c17860 0.42 -0.2 1,866,997 - PGA1_c17860 0.45 -1.6 1,867,075 + PGA1_c17860 0.51 -1.3 1,867,130 + PGA1_c17860 0.55 +1.7 1,867,138 - PGA1_c17860 0.56 +0.7 1,867,138 - PGA1_c17860 0.56 -0.9 1,867,140 + PGA1_c17860 0.56 -0.3 1,867,140 + PGA1_c17860 0.56 +0.1 1,867,140 + PGA1_c17860 0.56 -1.1 1,867,140 + PGA1_c17860 0.56 -0.3 1,867,140 + PGA1_c17860 0.56 -0.3 1,867,148 - PGA1_c17860 0.57 +0.5 1,867,148 - PGA1_c17860 0.57 -0.6 1,867,205 - PGA1_c17860 0.61 -2.1
Or see this region's nucleotide sequence