Strain Fitness in Marinobacter adhaerens HP15 around HP15_1719

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1718 and HP15_1719 are separated by 5 nucleotidesHP15_1719 and HP15_1720 are separated by 25 nucleotidesHP15_1720 and HP15_1721 are separated by 47 nucleotides HP15_1718: HP15_1718 - ATP-dependent DNA helicase RecQ, at 1,816,442 to 1,818,310 _1718 HP15_1719: HP15_1719 - conserved hypothetical protein, at 1,818,316 to 1,818,828 _1719 HP15_1720: HP15_1720 - hypothetical protein, at 1,818,854 to 1,819,009 _1720 HP15_1721: HP15_1721 - conserved hypothetical protein, secreted, at 1,819,057 to 1,820,013 _1721 Position (kb) 1818 1819Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1817.457 kb on - strand, within HP15_1718at 1817.467 kb on + strand, within HP15_1718at 1817.470 kb on + strand, within HP15_1718at 1817.540 kb on - strand, within HP15_1718at 1817.892 kb on + strand, within HP15_1718at 1817.975 kb on - strand, within HP15_1718at 1818.304 kb on + strandat 1818.334 kb on - strandat 1818.691 kb on - strand, within HP15_1719at 1818.693 kb on + strand, within HP15_1719at 1818.693 kb on + strand, within HP15_1719at 1818.693 kb on + strand, within HP15_1719at 1818.707 kb on - strand, within HP15_1719at 1818.779 kb on + strandat 1818.792 kb on - strandat 1818.801 kb on + strandat 1818.801 kb on + strandat 1818.804 kb on - strandat 1818.814 kb on - strandat 1818.818 kb on + strandat 1818.828 kb on + strandat 1818.836 kb on - strandat 1818.926 kb on + strand, within HP15_1720at 1819.004 kb on + strandat 1819.150 kb on - strandat 1819.175 kb on - strand, within HP15_1721at 1819.292 kb on - strand, within HP15_1721at 1819.329 kb on - strand, within HP15_1721at 1819.454 kb on + strand, within HP15_1721at 1819.637 kb on - strand, within HP15_1721at 1819.769 kb on - strand, within HP15_1721

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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1,817,457 - HP15_1718 0.54 -1.0
1,817,467 + HP15_1718 0.55 -0.5
1,817,470 + HP15_1718 0.55 +0.1
1,817,540 - HP15_1718 0.59 +0.6
1,817,892 + HP15_1718 0.78 -0.9
1,817,975 - HP15_1718 0.82 +0.1
1,818,304 + +0.0
1,818,334 - +0.2
1,818,691 - HP15_1719 0.73 -3.0
1,818,693 + HP15_1719 0.73 -1.7
1,818,693 + HP15_1719 0.73 +0.4
1,818,693 + HP15_1719 0.73 -0.9
1,818,707 - HP15_1719 0.76 +2.3
1,818,779 + -0.4
1,818,792 - -0.9
1,818,801 + -0.2
1,818,801 + +0.6
1,818,804 - -0.5
1,818,814 - -1.2
1,818,818 + +0.5
1,818,828 + +0.5
1,818,836 - +0.8
1,818,926 + HP15_1720 0.46 -0.3
1,819,004 + +0.2
1,819,150 - -1.7
1,819,175 - HP15_1721 0.12 -0.2
1,819,292 - HP15_1721 0.25 +0.3
1,819,329 - HP15_1721 0.28 -1.5
1,819,454 + HP15_1721 0.41 +1.4
1,819,637 - HP15_1721 0.61 -0.4
1,819,769 - HP15_1721 0.74 +0.2

Or see this region's nucleotide sequence