Experiment: m.b. Furfuryl Alcohol 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16990 and PGA1_c17000 are separated by 187 nucleotides PGA1_c17000 and PGA1_c17010 overlap by 4 nucleotides PGA1_c17010 and PGA1_c17020 are separated by 106 nucleotides PGA1_c17020 and PGA1_c17030 overlap by 10 nucleotides
PGA1_c16990: PGA1_c16990 - putative enoyl-CoA hydratase FadB, at 1,775,266 to 1,776,042
_c16990
PGA1_c17000: PGA1_c17000 - cytochrome c-type biogenesis protein Ccl, at 1,776,230 to 1,776,724
_c17000
PGA1_c17010: PGA1_c17010 - cytochrome c-type biogenesis protein CcmF, at 1,776,721 to 1,778,685
_c17010
PGA1_c17020: PGA1_c17020 - Protein of unknown function (DUF3154)., at 1,778,792 to 1,779,403
_c17020
PGA1_c17030: PGA1_c17030 - peptidoglycan binding domain-containing protein, at 1,779,394 to 1,780,005
_c17030
Position (kb)
1776
1777
1778
1779 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1775.754 kb on + strand, within PGA1_c16990 at 1775.764 kb on + strand, within PGA1_c16990 at 1775.772 kb on - strand, within PGA1_c16990 at 1775.797 kb on + strand, within PGA1_c16990 at 1775.851 kb on + strand, within PGA1_c16990 at 1775.864 kb on - strand, within PGA1_c16990 at 1775.866 kb on + strand, within PGA1_c16990 at 1775.955 kb on - strand, within PGA1_c16990 at 1776.056 kb on - strand at 1776.125 kb on - strand at 1776.125 kb on - strand at 1776.125 kb on - strand at 1776.173 kb on + strand at 1776.181 kb on - strand at 1776.212 kb on + strand at 1778.796 kb on - strand at 1778.802 kb on + strand at 1778.802 kb on + strand at 1778.812 kb on + strand at 1778.830 kb on + strand at 1778.859 kb on + strand, within PGA1_c17020 at 1778.898 kb on - strand, within PGA1_c17020 at 1778.916 kb on - strand, within PGA1_c17020 at 1778.969 kb on - strand, within PGA1_c17020 at 1779.232 kb on - strand, within PGA1_c17020 at 1779.263 kb on - strand, within PGA1_c17020 at 1779.339 kb on - strand, within PGA1_c17020 at 1779.346 kb on - strand at 1779.387 kb on + strand at 1779.388 kb on - strand at 1779.450 kb on - strand at 1779.596 kb on - strand, within PGA1_c17030
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.032 vol% remove 1,775,754 + PGA1_c16990 0.63 -1.8 1,775,764 + PGA1_c16990 0.64 -0.4 1,775,772 - PGA1_c16990 0.65 +0.5 1,775,797 + PGA1_c16990 0.68 -0.3 1,775,851 + PGA1_c16990 0.75 -0.6 1,775,864 - PGA1_c16990 0.77 +2.0 1,775,866 + PGA1_c16990 0.77 -1.9 1,775,955 - PGA1_c16990 0.89 -1.9 1,776,056 - -0.3 1,776,125 - +0.1 1,776,125 - -0.6 1,776,125 - +1.1 1,776,173 + -1.7 1,776,181 - -0.3 1,776,212 + -0.9 1,778,796 - -1.7 1,778,802 + +0.1 1,778,802 + -1.1 1,778,812 + -0.3 1,778,830 + -2.2 1,778,859 + PGA1_c17020 0.11 -0.4 1,778,898 - PGA1_c17020 0.17 -2.0 1,778,916 - PGA1_c17020 0.20 -0.9 1,778,969 - PGA1_c17020 0.29 -1.4 1,779,232 - PGA1_c17020 0.72 -0.9 1,779,263 - PGA1_c17020 0.77 +0.9 1,779,339 - PGA1_c17020 0.89 -1.1 1,779,346 - +0.7 1,779,387 + -1.2 1,779,388 - +0.7 1,779,450 - -0.2 1,779,596 - PGA1_c17030 0.33 +0.3
Or see this region's nucleotide sequence