Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1585 and HP15_1586 are separated by 6 nucleotides HP15_1586 and HP15_1587 are separated by 44 nucleotides HP15_1587 and HP15_1588 overlap by 11 nucleotides
HP15_1585: HP15_1585 - oxidoreductase, FAD/FMN-binding protein, at 1,676,164 to 1,678,614
_1585
HP15_1586: HP15_1586 - oxidoreductase N-terminal domain-containing protein, at 1,678,621 to 1,679,667
_1586
HP15_1587: HP15_1587 - oxidoreductase, short-chain dehydrogenase/reductase family protein, at 1,679,712 to 1,680,545
_1587
HP15_1588: HP15_1588 - HhH-GPD family protein, at 1,680,535 to 1,681,377
_1588
Position (kb)
1678
1679
1680 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1677.734 kb on + strand, within HP15_1585 at 1677.735 kb on - strand, within HP15_1585 at 1677.992 kb on + strand, within HP15_1585 at 1678.026 kb on - strand, within HP15_1585 at 1678.036 kb on - strand, within HP15_1585 at 1678.053 kb on + strand, within HP15_1585 at 1678.178 kb on + strand, within HP15_1585 at 1678.184 kb on - strand, within HP15_1585 at 1678.388 kb on - strand at 1678.511 kb on + strand at 1678.567 kb on - strand at 1678.610 kb on + strand at 1678.779 kb on + strand, within HP15_1586 at 1678.794 kb on - strand, within HP15_1586 at 1678.816 kb on + strand, within HP15_1586 at 1678.838 kb on + strand, within HP15_1586 at 1678.874 kb on + strand, within HP15_1586 at 1678.882 kb on - strand, within HP15_1586 at 1678.882 kb on - strand, within HP15_1586 at 1678.882 kb on - strand, within HP15_1586 at 1678.896 kb on + strand, within HP15_1586 at 1678.998 kb on + strand, within HP15_1586 at 1679.074 kb on - strand, within HP15_1586 at 1679.074 kb on - strand, within HP15_1586 at 1679.114 kb on + strand, within HP15_1586 at 1679.177 kb on + strand, within HP15_1586 at 1679.295 kb on + strand, within HP15_1586 at 1679.443 kb on - strand, within HP15_1586 at 1679.484 kb on - strand, within HP15_1586 at 1679.528 kb on + strand, within HP15_1586 at 1679.536 kb on - strand, within HP15_1586 at 1679.536 kb on - strand, within HP15_1586 at 1679.536 kb on - strand, within HP15_1586 at 1679.536 kb on - strand, within HP15_1586 at 1679.541 kb on - strand, within HP15_1586 at 1679.686 kb on + strand at 1679.694 kb on - strand at 1679.694 kb on - strand at 1679.744 kb on + strand at 1679.775 kb on + strand at 1679.783 kb on - strand at 1679.783 kb on - strand at 1679.783 kb on - strand at 1679.808 kb on - strand, within HP15_1587 at 1679.808 kb on - strand, within HP15_1587 at 1679.901 kb on + strand, within HP15_1587 at 1679.932 kb on + strand, within HP15_1587 at 1679.940 kb on - strand, within HP15_1587 at 1679.940 kb on - strand, within HP15_1587 at 1680.006 kb on - strand, within HP15_1587 at 1680.135 kb on - strand, within HP15_1587 at 1680.148 kb on + strand, within HP15_1587 at 1680.171 kb on - strand, within HP15_1587 at 1680.193 kb on - strand, within HP15_1587 at 1680.193 kb on - strand, within HP15_1587 at 1680.193 kb on - strand, within HP15_1587 at 1680.311 kb on - strand, within HP15_1587 at 1680.358 kb on + strand, within HP15_1587 at 1680.403 kb on - strand, within HP15_1587
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 1,677,734 + HP15_1585 0.64 +0.7 1,677,735 - HP15_1585 0.64 +0.4 1,677,992 + HP15_1585 0.75 -0.5 1,678,026 - HP15_1585 0.76 -1.2 1,678,036 - HP15_1585 0.76 +0.0 1,678,053 + HP15_1585 0.77 -0.3 1,678,178 + HP15_1585 0.82 +1.0 1,678,184 - HP15_1585 0.82 +0.2 1,678,388 - +0.1 1,678,511 + -1.2 1,678,567 - -0.5 1,678,610 + +0.3 1,678,779 + HP15_1586 0.15 -0.0 1,678,794 - HP15_1586 0.17 -2.6 1,678,816 + HP15_1586 0.19 -0.4 1,678,838 + HP15_1586 0.21 -0.5 1,678,874 + HP15_1586 0.24 -0.0 1,678,882 - HP15_1586 0.25 -0.0 1,678,882 - HP15_1586 0.25 +0.3 1,678,882 - HP15_1586 0.25 -0.9 1,678,896 + HP15_1586 0.26 -1.6 1,678,998 + HP15_1586 0.36 -0.8 1,679,074 - HP15_1586 0.43 +1.3 1,679,074 - HP15_1586 0.43 +0.6 1,679,114 + HP15_1586 0.47 -0.2 1,679,177 + HP15_1586 0.53 +0.4 1,679,295 + HP15_1586 0.64 +0.1 1,679,443 - HP15_1586 0.79 -0.4 1,679,484 - HP15_1586 0.82 -0.6 1,679,528 + HP15_1586 0.87 -1.7 1,679,536 - HP15_1586 0.87 -1.7 1,679,536 - HP15_1586 0.87 -0.2 1,679,536 - HP15_1586 0.87 -3.4 1,679,536 - HP15_1586 0.87 -0.2 1,679,541 - HP15_1586 0.88 +2.3 1,679,686 + +0.7 1,679,694 - -0.4 1,679,694 - -0.3 1,679,744 + -0.4 1,679,775 + +1.0 1,679,783 - +0.3 1,679,783 - +0.7 1,679,783 - -0.7 1,679,808 - HP15_1587 0.12 +0.4 1,679,808 - HP15_1587 0.12 +0.2 1,679,901 + HP15_1587 0.23 -2.4 1,679,932 + HP15_1587 0.26 +1.3 1,679,940 - HP15_1587 0.27 +0.6 1,679,940 - HP15_1587 0.27 -0.9 1,680,006 - HP15_1587 0.35 -1.4 1,680,135 - HP15_1587 0.51 +0.8 1,680,148 + HP15_1587 0.52 +0.3 1,680,171 - HP15_1587 0.55 -0.2 1,680,193 - HP15_1587 0.58 -1.1 1,680,193 - HP15_1587 0.58 +0.6 1,680,193 - HP15_1587 0.58 +0.8 1,680,311 - HP15_1587 0.72 -0.2 1,680,358 + HP15_1587 0.77 +1.8 1,680,403 - HP15_1587 0.83 -1.6
Or see this region's nucleotide sequence