Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1375 and HP15_1376 are separated by 391 nucleotides HP15_1376 and HP15_1377 are separated by 57 nucleotides HP15_1377 and HP15_1378 are separated by 172 nucleotides HP15_1378 and HP15_1379 are separated by 379 nucleotides
HP15_1375: HP15_1375 - cation diffusion facilitator family transporter, at 1,449,993 to 1,451,151
_1375
HP15_1376: HP15_1376 - hypothetical protein, at 1,451,543 to 1,451,647
_1376
HP15_1377: HP15_1377 - dihydroorotate dehydrogenase, at 1,451,705 to 1,452,580
_1377
HP15_1378: HP15_1378 - ribosome modulation factor, at 1,452,753 to 1,452,944
_1378
HP15_1379: HP15_1379 - RNA methylase, at 1,453,324 to 1,455,459
_1379
Position (kb)
1451
1452
1453 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1450.778 kb on - strand, within HP15_1375 at 1450.780 kb on + strand, within HP15_1375 at 1450.827 kb on - strand, within HP15_1375 at 1450.852 kb on + strand, within HP15_1375 at 1450.860 kb on - strand, within HP15_1375 at 1450.937 kb on - strand, within HP15_1375 at 1451.250 kb on - strand at 1451.752 kb on - strand at 1452.098 kb on - strand, within HP15_1377 at 1452.479 kb on + strand, within HP15_1377 at 1452.603 kb on + strand at 1452.688 kb on + strand at 1452.768 kb on - strand at 1452.991 kb on + strand at 1453.004 kb on - strand at 1453.069 kb on - strand at 1453.069 kb on - strand at 1453.074 kb on - strand at 1453.287 kb on + strand at 1453.397 kb on + strand at 1453.406 kb on + strand at 1453.406 kb on + strand at 1453.414 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 1,450,778 - HP15_1375 0.68 -1.1 1,450,780 + HP15_1375 0.68 -0.6 1,450,827 - HP15_1375 0.72 +1.2 1,450,852 + HP15_1375 0.74 -0.1 1,450,860 - HP15_1375 0.75 +0.0 1,450,937 - HP15_1375 0.81 -1.1 1,451,250 - -0.4 1,451,752 - -4.5 1,452,098 - HP15_1377 0.45 -3.9 1,452,479 + HP15_1377 0.88 -2.8 1,452,603 + +0.1 1,452,688 + -0.1 1,452,768 - +0.3 1,452,991 + -1.5 1,453,004 - +0.2 1,453,069 - +0.3 1,453,069 - -0.5 1,453,074 - +0.0 1,453,287 + +0.9 1,453,397 + -0.5 1,453,406 + +1.0 1,453,406 + -1.3 1,453,414 - -0.9
Or see this region's nucleotide sequence