Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1357 and HP15_1359 are separated by 68 nucleotides HP15_1359 and HP15_1358 overlap by 9 nucleotides HP15_1358 and HP15_1360 are separated by 126 nucleotides
HP15_1357: HP15_1357 - gamma-glutamyltranspeptidase periplasmic precursor, at 1,426,664 to 1,428,427
_1357
HP15_1359: HP15_1359 - hypothetical protein, at 1,428,496 to 1,428,720
_1359
HP15_1358: HP15_1358 - formyltetrahydrofolate deformylase, at 1,428,712 to 1,429,425
_1358
HP15_1360: HP15_1360 - DNA gyrase subunit A-like protein, at 1,429,552 to 1,432,173
_1360
Position (kb)
1428
1429
1430 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1427.745 kb on - strand, within HP15_1357 at 1427.814 kb on + strand, within HP15_1357 at 1427.831 kb on + strand, within HP15_1357 at 1427.871 kb on + strand, within HP15_1357 at 1427.911 kb on + strand, within HP15_1357 at 1427.913 kb on - strand, within HP15_1357 at 1428.151 kb on + strand, within HP15_1357 at 1428.493 kb on + strand at 1428.749 kb on + strand at 1428.749 kb on + strand at 1428.836 kb on - strand, within HP15_1358 at 1429.023 kb on - strand, within HP15_1358 at 1429.064 kb on + strand, within HP15_1358 at 1429.181 kb on + strand, within HP15_1358 at 1429.192 kb on + strand, within HP15_1358 at 1429.192 kb on + strand, within HP15_1358 at 1429.200 kb on - strand, within HP15_1358 at 1429.200 kb on - strand, within HP15_1358 at 1429.317 kb on + strand, within HP15_1358 at 1429.334 kb on - strand, within HP15_1358 at 1429.334 kb on - strand, within HP15_1358 at 1429.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 1,427,745 - HP15_1357 0.61 -0.2 1,427,814 + HP15_1357 0.65 +0.0 1,427,831 + HP15_1357 0.66 -0.4 1,427,871 + HP15_1357 0.68 +0.9 1,427,911 + HP15_1357 0.71 +1.6 1,427,913 - HP15_1357 0.71 -0.3 1,428,151 + HP15_1357 0.84 +1.0 1,428,493 + -1.1 1,428,749 + -1.1 1,428,749 + +0.9 1,428,836 - HP15_1358 0.17 -0.1 1,429,023 - HP15_1358 0.44 -0.9 1,429,064 + HP15_1358 0.49 -3.9 1,429,181 + HP15_1358 0.66 -1.2 1,429,192 + HP15_1358 0.67 -0.1 1,429,192 + HP15_1358 0.67 -0.8 1,429,200 - HP15_1358 0.68 +1.5 1,429,200 - HP15_1358 0.68 -1.6 1,429,317 + HP15_1358 0.85 +0.9 1,429,334 - HP15_1358 0.87 -0.1 1,429,334 - HP15_1358 0.87 -0.4 1,429,409 - -0.1
Or see this region's nucleotide sequence