Strain Fitness in Marinobacter adhaerens HP15 around HP15_137

Experiment: m.b. Doxycycline hyclate 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_135 and HP15_136 are separated by 75 nucleotidesHP15_136 and HP15_137 are separated by 57 nucleotidesHP15_137 and HP15_138 are separated by 45 nucleotides HP15_135: HP15_135 - von Willebrand factor, type A-like protein, at 141,139 to 142,911 _135 HP15_136: HP15_136 - conserved hypothetical protein, at 142,987 to 143,280 _136 HP15_137: HP15_137 - hypothetical protein, at 143,338 to 143,526 _137 HP15_138: HP15_138 - protein containing Phage P4 alpha, zinc-binding domain, at 143,572 to 144,687 _138 Position (kb) 143 144Strain fitness (log2 ratio) -2 -1 0 1 2 3at 142.398 kb on + strand, within HP15_135at 142.542 kb on - strand, within HP15_135at 142.633 kb on + strand, within HP15_135at 142.638 kb on + strand, within HP15_135at 142.658 kb on - strand, within HP15_135at 142.687 kb on - strand, within HP15_135at 142.806 kb on - strandat 142.845 kb on - strandat 142.847 kb on + strandat 143.020 kb on + strand, within HP15_136at 143.032 kb on + strand, within HP15_136at 143.032 kb on + strand, within HP15_136at 143.212 kb on - strand, within HP15_136at 143.227 kb on - strand, within HP15_136at 143.251 kb on + strandat 143.295 kb on + strandat 143.302 kb on + strandat 143.303 kb on - strandat 143.310 kb on + strandat 143.310 kb on - strandat 143.327 kb on + strandat 143.330 kb on - strandat 143.336 kb on + strandat 143.439 kb on + strand, within HP15_137at 143.520 kb on - strandat 143.562 kb on + strandat 143.564 kb on + strandat 143.569 kb on + strandat 143.577 kb on - strandat 143.593 kb on + strandat 143.593 kb on + strandat 143.601 kb on - strandat 143.601 kb on - strandat 143.658 kb on + strandat 143.677 kb on - strandat 143.688 kb on + strand, within HP15_138at 143.688 kb on - strand, within HP15_138at 143.710 kb on - strand, within HP15_138at 143.747 kb on - strand, within HP15_138at 143.954 kb on + strand, within HP15_138at 143.954 kb on + strand, within HP15_138at 143.967 kb on + strand, within HP15_138at 143.975 kb on - strand, within HP15_138at 143.980 kb on - strand, within HP15_138at 143.990 kb on - strand, within HP15_138at 143.990 kb on - strand, within HP15_138at 144.052 kb on + strand, within HP15_138at 144.067 kb on - strand, within HP15_138at 144.298 kb on + strand, within HP15_138at 144.298 kb on + strand, within HP15_138at 144.478 kb on + strand, within HP15_138at 144.501 kb on - strand, within HP15_138

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml
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142,398 + HP15_135 0.71 -0.1
142,542 - HP15_135 0.79 -0.9
142,633 + HP15_135 0.84 +0.9
142,638 + HP15_135 0.85 +1.1
142,658 - HP15_135 0.86 +1.3
142,687 - HP15_135 0.87 +0.7
142,806 - +0.4
142,845 - -0.1
142,847 + -1.0
143,020 + HP15_136 0.11 +2.9
143,032 + HP15_136 0.15 -0.4
143,032 + HP15_136 0.15 -1.5
143,212 - HP15_136 0.77 +0.1
143,227 - HP15_136 0.82 +0.2
143,251 + -0.5
143,295 + +1.9
143,302 + +1.6
143,303 - +0.0
143,310 + -0.3
143,310 - -0.2
143,327 + +0.8
143,330 - +1.6
143,336 + -0.2
143,439 + HP15_137 0.53 -2.7
143,520 - -1.5
143,562 + +0.3
143,564 + +0.0
143,569 + -1.5
143,577 - +2.3
143,593 + -0.5
143,593 + -1.4
143,601 - -0.6
143,601 - -1.2
143,658 + +1.2
143,677 - +0.0
143,688 + HP15_138 0.10 +0.1
143,688 - HP15_138 0.10 +1.3
143,710 - HP15_138 0.12 +0.9
143,747 - HP15_138 0.16 -0.5
143,954 + HP15_138 0.34 -0.1
143,954 + HP15_138 0.34 -2.2
143,967 + HP15_138 0.35 +0.3
143,975 - HP15_138 0.36 -0.5
143,980 - HP15_138 0.37 -0.8
143,990 - HP15_138 0.37 -0.9
143,990 - HP15_138 0.37 -0.1
144,052 + HP15_138 0.43 +0.0
144,067 - HP15_138 0.44 +0.5
144,298 + HP15_138 0.65 -0.6
144,298 + HP15_138 0.65 -0.3
144,478 + HP15_138 0.81 +0.2
144,501 - HP15_138 0.83 -0.4

Or see this region's nucleotide sequence