Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_135 and HP15_136 are separated by 75 nucleotides HP15_136 and HP15_137 are separated by 57 nucleotides HP15_137 and HP15_138 are separated by 45 nucleotides
HP15_135: HP15_135 - von Willebrand factor, type A-like protein, at 141,139 to 142,911
_135
HP15_136: HP15_136 - conserved hypothetical protein, at 142,987 to 143,280
_136
HP15_137: HP15_137 - hypothetical protein, at 143,338 to 143,526
_137
HP15_138: HP15_138 - protein containing Phage P4 alpha, zinc-binding domain, at 143,572 to 144,687
_138
Position (kb)
143
144 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 142.398 kb on + strand, within HP15_135 at 142.542 kb on - strand, within HP15_135 at 142.633 kb on + strand, within HP15_135 at 142.638 kb on + strand, within HP15_135 at 142.658 kb on - strand, within HP15_135 at 142.687 kb on - strand, within HP15_135 at 142.806 kb on - strand at 142.845 kb on - strand at 142.847 kb on + strand at 143.020 kb on + strand, within HP15_136 at 143.032 kb on + strand, within HP15_136 at 143.032 kb on + strand, within HP15_136 at 143.212 kb on - strand, within HP15_136 at 143.227 kb on - strand, within HP15_136 at 143.251 kb on + strand at 143.295 kb on + strand at 143.302 kb on + strand at 143.303 kb on - strand at 143.310 kb on + strand at 143.310 kb on - strand at 143.327 kb on + strand at 143.330 kb on - strand at 143.336 kb on + strand at 143.439 kb on + strand, within HP15_137 at 143.520 kb on - strand at 143.562 kb on + strand at 143.564 kb on + strand at 143.569 kb on + strand at 143.577 kb on - strand at 143.593 kb on + strand at 143.593 kb on + strand at 143.601 kb on - strand at 143.601 kb on - strand at 143.658 kb on + strand at 143.677 kb on - strand at 143.688 kb on + strand, within HP15_138 at 143.688 kb on - strand, within HP15_138 at 143.710 kb on - strand, within HP15_138 at 143.747 kb on - strand, within HP15_138 at 143.954 kb on + strand, within HP15_138 at 143.954 kb on + strand, within HP15_138 at 143.967 kb on + strand, within HP15_138 at 143.975 kb on - strand, within HP15_138 at 143.980 kb on - strand, within HP15_138 at 143.990 kb on - strand, within HP15_138 at 143.990 kb on - strand, within HP15_138 at 144.052 kb on + strand, within HP15_138 at 144.067 kb on - strand, within HP15_138 at 144.298 kb on + strand, within HP15_138 at 144.298 kb on + strand, within HP15_138 at 144.478 kb on + strand, within HP15_138 at 144.501 kb on - strand, within HP15_138
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 142,398 + HP15_135 0.71 -0.1 142,542 - HP15_135 0.79 -0.9 142,633 + HP15_135 0.84 +0.9 142,638 + HP15_135 0.85 +1.1 142,658 - HP15_135 0.86 +1.3 142,687 - HP15_135 0.87 +0.7 142,806 - +0.4 142,845 - -0.1 142,847 + -1.0 143,020 + HP15_136 0.11 +2.9 143,032 + HP15_136 0.15 -0.4 143,032 + HP15_136 0.15 -1.5 143,212 - HP15_136 0.77 +0.1 143,227 - HP15_136 0.82 +0.2 143,251 + -0.5 143,295 + +1.9 143,302 + +1.6 143,303 - +0.0 143,310 + -0.3 143,310 - -0.2 143,327 + +0.8 143,330 - +1.6 143,336 + -0.2 143,439 + HP15_137 0.53 -2.7 143,520 - -1.5 143,562 + +0.3 143,564 + +0.0 143,569 + -1.5 143,577 - +2.3 143,593 + -0.5 143,593 + -1.4 143,601 - -0.6 143,601 - -1.2 143,658 + +1.2 143,677 - +0.0 143,688 + HP15_138 0.10 +0.1 143,688 - HP15_138 0.10 +1.3 143,710 - HP15_138 0.12 +0.9 143,747 - HP15_138 0.16 -0.5 143,954 + HP15_138 0.34 -0.1 143,954 + HP15_138 0.34 -2.2 143,967 + HP15_138 0.35 +0.3 143,975 - HP15_138 0.36 -0.5 143,980 - HP15_138 0.37 -0.8 143,990 - HP15_138 0.37 -0.9 143,990 - HP15_138 0.37 -0.1 144,052 + HP15_138 0.43 +0.0 144,067 - HP15_138 0.44 +0.5 144,298 + HP15_138 0.65 -0.6 144,298 + HP15_138 0.65 -0.3 144,478 + HP15_138 0.81 +0.2 144,501 - HP15_138 0.83 -0.4
Or see this region's nucleotide sequence