Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1310 and HP15_1311 are separated by 45 nucleotides HP15_1311 and HP15_1312 are separated by 13 nucleotides HP15_1312 and HP15_1313 are separated by 5 nucleotides
HP15_1310: HP15_1310 - methyl-accepting chemotaxis sensory transducer, at 1,369,393 to 1,371,423
_1310
HP15_1311: HP15_1311 - ATP-cobalamin adenosyltransferase, at 1,371,469 to 1,372,026
_1311
HP15_1312: HP15_1312 - 2-dehydropantoate 2-reductase, at 1,372,040 to 1,372,933
_1312
HP15_1313: HP15_1313 - valyl-tRNA synthetase, at 1,372,939 to 1,375,791
_1313
Position (kb)
1372
1373 Strain fitness (log2 ratio)
-1
0
1 at 1371.051 kb on - strand, within HP15_1310 at 1371.051 kb on - strand, within HP15_1310 at 1371.105 kb on - strand, within HP15_1310 at 1371.140 kb on + strand, within HP15_1310 at 1371.155 kb on + strand, within HP15_1310 at 1371.417 kb on + strand at 1371.560 kb on - strand, within HP15_1311 at 1371.574 kb on + strand, within HP15_1311 at 1371.656 kb on + strand, within HP15_1311 at 1371.972 kb on - strand at 1372.031 kb on - strand at 1372.327 kb on - strand, within HP15_1312 at 1372.355 kb on + strand, within HP15_1312 at 1372.602 kb on - strand, within HP15_1312 at 1372.645 kb on - strand, within HP15_1312 at 1372.670 kb on + strand, within HP15_1312 at 1372.714 kb on - strand, within HP15_1312 at 1372.728 kb on + strand, within HP15_1312 at 1372.861 kb on + strand at 1372.872 kb on + strand at 1372.890 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 1,371,051 - HP15_1310 0.82 -0.1 1,371,051 - HP15_1310 0.82 +0.4 1,371,105 - HP15_1310 0.84 -1.1 1,371,140 + HP15_1310 0.86 +0.4 1,371,155 + HP15_1310 0.87 +0.2 1,371,417 + +0.4 1,371,560 - HP15_1311 0.16 +0.8 1,371,574 + HP15_1311 0.19 -0.4 1,371,656 + HP15_1311 0.34 -0.3 1,371,972 - -0.3 1,372,031 - +0.9 1,372,327 - HP15_1312 0.32 -1.5 1,372,355 + HP15_1312 0.35 -0.6 1,372,602 - HP15_1312 0.63 -1.6 1,372,645 - HP15_1312 0.68 +0.9 1,372,670 + HP15_1312 0.70 +0.5 1,372,714 - HP15_1312 0.75 -0.1 1,372,728 + HP15_1312 0.77 -1.4 1,372,861 + +0.1 1,372,872 + -1.5 1,372,890 + -1.1
Or see this region's nucleotide sequence