Experiment: m.b. Furfuryl Alcohol 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c11290 and PGA1_c11300 are separated by 168 nucleotides PGA1_c11300 and PGA1_c11310 overlap by 4 nucleotides PGA1_c11310 and PGA1_c11320 are separated by 161 nucleotides
PGA1_c11290: PGA1_c11290 - putative holdfast attachment protein C, at 1,167,324 to 1,169,111
_c11290
PGA1_c11300: PGA1_c11300 - putative nodulation protein L, at 1,169,280 to 1,169,834
_c11300
PGA1_c11310: PGA1_c11310 - Uncharacterized conserved protein, at 1,169,831 to 1,170,325
_c11310
PGA1_c11320: PGA1_c11320 - 3-hydroxyacyl-CoA dehydrogenase type-2, at 1,170,487 to 1,171,242
_c11320
Position (kb)
1169
1170 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1168.288 kb on + strand, within PGA1_c11290 at 1168.296 kb on - strand, within PGA1_c11290 at 1168.319 kb on + strand, within PGA1_c11290 at 1168.365 kb on - strand, within PGA1_c11290 at 1168.456 kb on - strand, within PGA1_c11290 at 1168.514 kb on - strand, within PGA1_c11290 at 1168.514 kb on - strand, within PGA1_c11290 at 1168.571 kb on + strand, within PGA1_c11290 at 1168.636 kb on + strand, within PGA1_c11290 at 1168.656 kb on + strand, within PGA1_c11290 at 1168.656 kb on + strand, within PGA1_c11290 at 1168.656 kb on + strand, within PGA1_c11290 at 1168.664 kb on - strand, within PGA1_c11290 at 1168.664 kb on - strand, within PGA1_c11290 at 1168.664 kb on - strand, within PGA1_c11290 at 1168.664 kb on - strand, within PGA1_c11290 at 1168.664 kb on - strand, within PGA1_c11290 at 1168.664 kb on - strand, within PGA1_c11290 at 1168.674 kb on - strand, within PGA1_c11290 at 1168.683 kb on + strand, within PGA1_c11290 at 1168.688 kb on - strand, within PGA1_c11290 at 1168.772 kb on - strand, within PGA1_c11290 at 1168.808 kb on + strand, within PGA1_c11290 at 1168.877 kb on + strand, within PGA1_c11290 at 1168.877 kb on + strand, within PGA1_c11290 at 1168.877 kb on + strand, within PGA1_c11290 at 1168.877 kb on + strand, within PGA1_c11290 at 1168.877 kb on + strand, within PGA1_c11290 at 1168.877 kb on + strand, within PGA1_c11290 at 1168.877 kb on + strand, within PGA1_c11290 at 1168.885 kb on - strand, within PGA1_c11290 at 1168.885 kb on - strand, within PGA1_c11290 at 1168.885 kb on - strand, within PGA1_c11290 at 1168.885 kb on - strand, within PGA1_c11290 at 1168.885 kb on - strand, within PGA1_c11290 at 1168.895 kb on - strand, within PGA1_c11290 at 1168.925 kb on + strand, within PGA1_c11290 at 1168.943 kb on + strand at 1168.973 kb on + strand at 1168.984 kb on + strand at 1168.992 kb on - strand at 1168.992 kb on - strand at 1169.000 kb on - strand at 1169.047 kb on - strand at 1169.088 kb on - strand at 1169.107 kb on + strand at 1169.115 kb on - strand at 1169.239 kb on + strand at 1169.239 kb on + strand at 1169.269 kb on - strand at 1169.423 kb on + strand, within PGA1_c11300 at 1169.483 kb on - strand, within PGA1_c11300 at 1169.500 kb on - strand, within PGA1_c11300 at 1169.508 kb on - strand, within PGA1_c11300 at 1169.513 kb on + strand, within PGA1_c11300 at 1169.559 kb on + strand, within PGA1_c11300 at 1169.559 kb on + strand, within PGA1_c11300 at 1169.564 kb on + strand, within PGA1_c11300 at 1169.567 kb on - strand, within PGA1_c11300 at 1169.567 kb on - strand, within PGA1_c11300 at 1169.599 kb on - strand, within PGA1_c11300 at 1169.673 kb on + strand, within PGA1_c11300 at 1169.738 kb on + strand, within PGA1_c11300 at 1169.827 kb on - strand at 1169.842 kb on - strand at 1169.842 kb on - strand at 1169.844 kb on + strand at 1169.844 kb on + strand at 1169.852 kb on - strand at 1169.876 kb on + strand at 1169.900 kb on - strand, within PGA1_c11310 at 1169.949 kb on + strand, within PGA1_c11310 at 1169.990 kb on - strand, within PGA1_c11310 at 1170.076 kb on + strand, within PGA1_c11310 at 1170.159 kb on - strand, within PGA1_c11310 at 1170.277 kb on - strand at 1170.282 kb on - strand at 1170.320 kb on + strand at 1170.327 kb on + strand at 1170.332 kb on + strand at 1170.388 kb on + strand at 1170.393 kb on + strand at 1170.443 kb on + strand at 1170.443 kb on + strand at 1170.443 kb on + strand at 1170.461 kb on + strand at 1170.461 kb on + strand at 1170.472 kb on + strand at 1170.485 kb on + strand at 1170.581 kb on + strand, within PGA1_c11320 at 1170.586 kb on + strand, within PGA1_c11320 at 1170.599 kb on + strand, within PGA1_c11320 at 1170.654 kb on + strand, within PGA1_c11320 at 1170.686 kb on + strand, within PGA1_c11320 at 1170.707 kb on - strand, within PGA1_c11320 at 1170.812 kb on + strand, within PGA1_c11320
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.032 vol% remove 1,168,288 + PGA1_c11290 0.54 +0.1 1,168,296 - PGA1_c11290 0.54 +0.4 1,168,319 + PGA1_c11290 0.56 -0.1 1,168,365 - PGA1_c11290 0.58 -1.2 1,168,456 - PGA1_c11290 0.63 +0.8 1,168,514 - PGA1_c11290 0.67 +1.4 1,168,514 - PGA1_c11290 0.67 +0.4 1,168,571 + PGA1_c11290 0.70 -0.2 1,168,636 + PGA1_c11290 0.73 +0.6 1,168,656 + PGA1_c11290 0.74 +0.1 1,168,656 + PGA1_c11290 0.74 -0.3 1,168,656 + PGA1_c11290 0.74 -0.1 1,168,664 - PGA1_c11290 0.75 +1.4 1,168,664 - PGA1_c11290 0.75 -0.0 1,168,664 - PGA1_c11290 0.75 +0.9 1,168,664 - PGA1_c11290 0.75 +0.4 1,168,664 - PGA1_c11290 0.75 +0.8 1,168,664 - PGA1_c11290 0.75 +0.8 1,168,674 - PGA1_c11290 0.76 +1.2 1,168,683 + PGA1_c11290 0.76 +0.5 1,168,688 - PGA1_c11290 0.76 -0.6 1,168,772 - PGA1_c11290 0.81 -0.8 1,168,808 + PGA1_c11290 0.83 +2.1 1,168,877 + PGA1_c11290 0.87 +0.4 1,168,877 + PGA1_c11290 0.87 -0.0 1,168,877 + PGA1_c11290 0.87 +0.0 1,168,877 + PGA1_c11290 0.87 -1.1 1,168,877 + PGA1_c11290 0.87 +1.8 1,168,877 + PGA1_c11290 0.87 -0.1 1,168,877 + PGA1_c11290 0.87 +0.8 1,168,885 - PGA1_c11290 0.87 +1.5 1,168,885 - PGA1_c11290 0.87 +1.6 1,168,885 - PGA1_c11290 0.87 +2.1 1,168,885 - PGA1_c11290 0.87 +1.3 1,168,885 - PGA1_c11290 0.87 +0.8 1,168,895 - PGA1_c11290 0.88 +0.4 1,168,925 + PGA1_c11290 0.90 +0.5 1,168,943 + -2.1 1,168,973 + -1.6 1,168,984 + -0.6 1,168,992 - +0.9 1,168,992 - -1.0 1,169,000 - -0.8 1,169,047 - +0.0 1,169,088 - -0.4 1,169,107 + +0.5 1,169,115 - +0.8 1,169,239 + +1.0 1,169,239 + -1.7 1,169,269 - +0.5 1,169,423 + PGA1_c11300 0.26 -0.6 1,169,483 - PGA1_c11300 0.37 +0.2 1,169,500 - PGA1_c11300 0.40 +0.9 1,169,508 - PGA1_c11300 0.41 +0.0 1,169,513 + PGA1_c11300 0.42 +0.4 1,169,559 + PGA1_c11300 0.50 +1.6 1,169,559 + PGA1_c11300 0.50 -0.2 1,169,564 + PGA1_c11300 0.51 +0.4 1,169,567 - PGA1_c11300 0.52 +0.1 1,169,567 - PGA1_c11300 0.52 -0.7 1,169,599 - PGA1_c11300 0.57 +0.9 1,169,673 + PGA1_c11300 0.71 +0.8 1,169,738 + PGA1_c11300 0.83 +1.0 1,169,827 - +1.8 1,169,842 - -0.5 1,169,842 - -0.2 1,169,844 + +0.2 1,169,844 + +1.1 1,169,852 - -0.7 1,169,876 + +0.2 1,169,900 - PGA1_c11310 0.14 +0.2 1,169,949 + PGA1_c11310 0.24 +0.3 1,169,990 - PGA1_c11310 0.32 +0.9 1,170,076 + PGA1_c11310 0.49 +3.4 1,170,159 - PGA1_c11310 0.66 +1.0 1,170,277 - +0.8 1,170,282 - +0.8 1,170,320 + +0.6 1,170,327 + +3.9 1,170,332 + -0.2 1,170,388 + +2.4 1,170,393 + -1.0 1,170,443 + +1.0 1,170,443 + -2.0 1,170,443 + +1.0 1,170,461 + +0.2 1,170,461 + +1.8 1,170,472 + -0.4 1,170,485 + -1.8 1,170,581 + PGA1_c11320 0.12 +0.2 1,170,586 + PGA1_c11320 0.13 -0.2 1,170,599 + PGA1_c11320 0.15 +0.2 1,170,654 + PGA1_c11320 0.22 -0.7 1,170,686 + PGA1_c11320 0.26 -0.7 1,170,707 - PGA1_c11320 0.29 +0.9 1,170,812 + PGA1_c11320 0.43 -2.6
Or see this region's nucleotide sequence