Experiment: m.b. Furfuryl Alcohol 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c11280 and PGA1_c11290 are separated by 87 nucleotides PGA1_c11290 and PGA1_c11300 are separated by 168 nucleotides PGA1_c11300 and PGA1_c11310 overlap by 4 nucleotides
PGA1_c11280: PGA1_c11280 - Putative hemolysin, at 1,166,373 to 1,167,236
_c11280
PGA1_c11290: PGA1_c11290 - putative holdfast attachment protein C, at 1,167,324 to 1,169,111
_c11290
PGA1_c11300: PGA1_c11300 - putative nodulation protein L, at 1,169,280 to 1,169,834
_c11300
PGA1_c11310: PGA1_c11310 - Uncharacterized conserved protein, at 1,169,831 to 1,170,325
_c11310
Position (kb)
1167
1168
1169
1170 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1166.333 kb on + strand at 1166.354 kb on + strand at 1166.354 kb on + strand at 1166.359 kb on + strand at 1166.364 kb on + strand at 1166.364 kb on + strand at 1166.367 kb on - strand at 1166.372 kb on - strand at 1166.429 kb on - strand at 1166.436 kb on - strand at 1166.436 kb on - strand at 1166.437 kb on + strand at 1166.444 kb on + strand at 1166.552 kb on + strand, within PGA1_c11280 at 1166.575 kb on + strand, within PGA1_c11280 at 1166.575 kb on + strand, within PGA1_c11280 at 1166.575 kb on + strand, within PGA1_c11280 at 1166.575 kb on + strand, within PGA1_c11280 at 1166.626 kb on + strand, within PGA1_c11280 at 1166.638 kb on - strand, within PGA1_c11280 at 1166.689 kb on + strand, within PGA1_c11280 at 1166.732 kb on + strand, within PGA1_c11280 at 1166.740 kb on - strand, within PGA1_c11280 at 1166.740 kb on - strand, within PGA1_c11280 at 1166.740 kb on - strand, within PGA1_c11280 at 1166.749 kb on + strand, within PGA1_c11280 at 1166.835 kb on + strand, within PGA1_c11280 at 1166.841 kb on - strand, within PGA1_c11280 at 1166.849 kb on + strand, within PGA1_c11280 at 1166.851 kb on - strand, within PGA1_c11280 at 1166.903 kb on - strand, within PGA1_c11280 at 1166.931 kb on - strand, within PGA1_c11280 at 1166.938 kb on - strand, within PGA1_c11280 at 1166.978 kb on + strand, within PGA1_c11280 at 1166.995 kb on + strand, within PGA1_c11280 at 1167.042 kb on - strand, within PGA1_c11280 at 1167.243 kb on - strand at 1167.270 kb on - strand at 1167.270 kb on - strand at 1167.291 kb on - strand at 1167.392 kb on - strand at 1167.418 kb on - strand at 1167.443 kb on + strand at 1167.443 kb on + strand at 1167.460 kb on + strand at 1167.464 kb on + strand at 1167.464 kb on + strand at 1167.473 kb on + strand at 1167.492 kb on - strand at 1167.501 kb on + strand at 1167.508 kb on - strand, within PGA1_c11290 at 1167.684 kb on + strand, within PGA1_c11290 at 1167.689 kb on + strand, within PGA1_c11290 at 1167.695 kb on + strand, within PGA1_c11290 at 1167.810 kb on - strand, within PGA1_c11290 at 1167.810 kb on - strand, within PGA1_c11290 at 1167.810 kb on - strand, within PGA1_c11290 at 1167.840 kb on + strand, within PGA1_c11290 at 1167.840 kb on + strand, within PGA1_c11290 at 1167.840 kb on + strand, within PGA1_c11290 at 1167.840 kb on + strand, within PGA1_c11290 at 1167.848 kb on - strand, within PGA1_c11290 at 1167.848 kb on - strand, within PGA1_c11290 at 1167.862 kb on + strand, within PGA1_c11290 at 1167.868 kb on + strand, within PGA1_c11290 at 1167.907 kb on + strand, within PGA1_c11290 at 1167.951 kb on - strand, within PGA1_c11290 at 1167.964 kb on - strand, within PGA1_c11290 at 1167.968 kb on - strand, within PGA1_c11290 at 1167.999 kb on + strand, within PGA1_c11290 at 1168.082 kb on + strand, within PGA1_c11290 at 1168.089 kb on + strand, within PGA1_c11290 at 1168.090 kb on - strand, within PGA1_c11290 at 1168.090 kb on - strand, within PGA1_c11290 at 1168.094 kb on + strand, within PGA1_c11290 at 1168.102 kb on - strand, within PGA1_c11290 at 1168.141 kb on + strand, within PGA1_c11290 at 1168.247 kb on + strand, within PGA1_c11290 at 1168.257 kb on + strand, within PGA1_c11290 at 1168.264 kb on - strand, within PGA1_c11290 at 1168.271 kb on + strand, within PGA1_c11290 at 1168.288 kb on + strand, within PGA1_c11290 at 1168.296 kb on - strand, within PGA1_c11290 at 1168.319 kb on + strand, within PGA1_c11290 at 1168.365 kb on - strand, within PGA1_c11290 at 1168.456 kb on - strand, within PGA1_c11290 at 1168.514 kb on - strand, within PGA1_c11290 at 1168.514 kb on - strand, within PGA1_c11290 at 1168.571 kb on + strand, within PGA1_c11290 at 1168.636 kb on + strand, within PGA1_c11290 at 1168.656 kb on + strand, within PGA1_c11290 at 1168.656 kb on + strand, within PGA1_c11290 at 1168.656 kb on + strand, within PGA1_c11290 at 1168.664 kb on - strand, within PGA1_c11290 at 1168.664 kb on - strand, within PGA1_c11290 at 1168.664 kb on - strand, within PGA1_c11290 at 1168.664 kb on - strand, within PGA1_c11290 at 1168.664 kb on - strand, within PGA1_c11290 at 1168.664 kb on - strand, within PGA1_c11290 at 1168.674 kb on - strand, within PGA1_c11290 at 1168.683 kb on + strand, within PGA1_c11290 at 1168.688 kb on - strand, within PGA1_c11290 at 1168.772 kb on - strand, within PGA1_c11290 at 1168.808 kb on + strand, within PGA1_c11290 at 1168.877 kb on + strand, within PGA1_c11290 at 1168.877 kb on + strand, within PGA1_c11290 at 1168.877 kb on + strand, within PGA1_c11290 at 1168.877 kb on + strand, within PGA1_c11290 at 1168.877 kb on + strand, within PGA1_c11290 at 1168.877 kb on + strand, within PGA1_c11290 at 1168.877 kb on + strand, within PGA1_c11290 at 1168.885 kb on - strand, within PGA1_c11290 at 1168.885 kb on - strand, within PGA1_c11290 at 1168.885 kb on - strand, within PGA1_c11290 at 1168.885 kb on - strand, within PGA1_c11290 at 1168.885 kb on - strand, within PGA1_c11290 at 1168.895 kb on - strand, within PGA1_c11290 at 1168.925 kb on + strand, within PGA1_c11290 at 1168.943 kb on + strand at 1168.973 kb on + strand at 1168.984 kb on + strand at 1168.992 kb on - strand at 1168.992 kb on - strand at 1169.000 kb on - strand at 1169.047 kb on - strand at 1169.088 kb on - strand at 1169.107 kb on + strand at 1169.115 kb on - strand at 1169.239 kb on + strand at 1169.239 kb on + strand at 1169.269 kb on - strand at 1169.423 kb on + strand, within PGA1_c11300 at 1169.483 kb on - strand, within PGA1_c11300 at 1169.500 kb on - strand, within PGA1_c11300 at 1169.508 kb on - strand, within PGA1_c11300 at 1169.513 kb on + strand, within PGA1_c11300 at 1169.559 kb on + strand, within PGA1_c11300 at 1169.559 kb on + strand, within PGA1_c11300 at 1169.564 kb on + strand, within PGA1_c11300 at 1169.567 kb on - strand, within PGA1_c11300 at 1169.567 kb on - strand, within PGA1_c11300 at 1169.599 kb on - strand, within PGA1_c11300 at 1169.673 kb on + strand, within PGA1_c11300 at 1169.738 kb on + strand, within PGA1_c11300 at 1169.827 kb on - strand at 1169.842 kb on - strand at 1169.842 kb on - strand at 1169.844 kb on + strand at 1169.844 kb on + strand at 1169.852 kb on - strand at 1169.876 kb on + strand at 1169.900 kb on - strand, within PGA1_c11310 at 1169.949 kb on + strand, within PGA1_c11310 at 1169.990 kb on - strand, within PGA1_c11310 at 1170.076 kb on + strand, within PGA1_c11310
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.032 vol% remove 1,166,333 + +1.2 1,166,354 + +1.6 1,166,354 + -1.0 1,166,359 + -0.2 1,166,364 + +0.8 1,166,364 + -0.8 1,166,367 - -2.0 1,166,372 - +1.4 1,166,429 - +0.2 1,166,436 - +0.1 1,166,436 - -1.4 1,166,437 + +0.5 1,166,444 + +0.8 1,166,552 + PGA1_c11280 0.21 +0.1 1,166,575 + PGA1_c11280 0.23 +0.8 1,166,575 + PGA1_c11280 0.23 +1.5 1,166,575 + PGA1_c11280 0.23 +1.4 1,166,575 + PGA1_c11280 0.23 +2.4 1,166,626 + PGA1_c11280 0.29 -0.2 1,166,638 - PGA1_c11280 0.31 +1.0 1,166,689 + PGA1_c11280 0.37 +0.0 1,166,732 + PGA1_c11280 0.42 +1.4 1,166,740 - PGA1_c11280 0.42 +0.2 1,166,740 - PGA1_c11280 0.42 +0.2 1,166,740 - PGA1_c11280 0.42 +1.1 1,166,749 + PGA1_c11280 0.44 +0.8 1,166,835 + PGA1_c11280 0.53 +1.6 1,166,841 - PGA1_c11280 0.54 +1.0 1,166,849 + PGA1_c11280 0.55 +2.1 1,166,851 - PGA1_c11280 0.55 +0.1 1,166,903 - PGA1_c11280 0.61 +0.6 1,166,931 - PGA1_c11280 0.65 +0.4 1,166,938 - PGA1_c11280 0.65 +0.2 1,166,978 + PGA1_c11280 0.70 +0.6 1,166,995 + PGA1_c11280 0.72 +3.3 1,167,042 - PGA1_c11280 0.77 -0.2 1,167,243 - -0.2 1,167,270 - -1.2 1,167,270 - +2.1 1,167,291 - -0.5 1,167,392 - +0.8 1,167,418 - +0.9 1,167,443 + +0.3 1,167,443 + -0.0 1,167,460 + +0.8 1,167,464 + +0.3 1,167,464 + +0.5 1,167,473 + -0.2 1,167,492 - +1.4 1,167,501 + +0.2 1,167,508 - PGA1_c11290 0.10 -1.1 1,167,684 + PGA1_c11290 0.20 +0.3 1,167,689 + PGA1_c11290 0.20 +0.8 1,167,695 + PGA1_c11290 0.21 +0.4 1,167,810 - PGA1_c11290 0.27 -0.8 1,167,810 - PGA1_c11290 0.27 +1.1 1,167,810 - PGA1_c11290 0.27 -0.2 1,167,840 + PGA1_c11290 0.29 -1.2 1,167,840 + PGA1_c11290 0.29 +0.4 1,167,840 + PGA1_c11290 0.29 -0.6 1,167,840 + PGA1_c11290 0.29 +1.0 1,167,848 - PGA1_c11290 0.29 +0.9 1,167,848 - PGA1_c11290 0.29 -0.5 1,167,862 + PGA1_c11290 0.30 -0.6 1,167,868 + PGA1_c11290 0.30 -0.2 1,167,907 + PGA1_c11290 0.33 -0.6 1,167,951 - PGA1_c11290 0.35 +0.5 1,167,964 - PGA1_c11290 0.36 +1.8 1,167,968 - PGA1_c11290 0.36 +0.5 1,167,999 + PGA1_c11290 0.38 +1.7 1,168,082 + PGA1_c11290 0.42 +0.4 1,168,089 + PGA1_c11290 0.43 -1.2 1,168,090 - PGA1_c11290 0.43 -1.4 1,168,090 - PGA1_c11290 0.43 +0.8 1,168,094 + PGA1_c11290 0.43 -0.0 1,168,102 - PGA1_c11290 0.44 -1.5 1,168,141 + PGA1_c11290 0.46 +0.0 1,168,247 + PGA1_c11290 0.52 +1.5 1,168,257 + PGA1_c11290 0.52 +0.4 1,168,264 - PGA1_c11290 0.53 -1.7 1,168,271 + PGA1_c11290 0.53 -0.2 1,168,288 + PGA1_c11290 0.54 +0.1 1,168,296 - PGA1_c11290 0.54 +0.4 1,168,319 + PGA1_c11290 0.56 -0.1 1,168,365 - PGA1_c11290 0.58 -1.2 1,168,456 - PGA1_c11290 0.63 +0.8 1,168,514 - PGA1_c11290 0.67 +1.4 1,168,514 - PGA1_c11290 0.67 +0.4 1,168,571 + PGA1_c11290 0.70 -0.2 1,168,636 + PGA1_c11290 0.73 +0.6 1,168,656 + PGA1_c11290 0.74 +0.1 1,168,656 + PGA1_c11290 0.74 -0.3 1,168,656 + PGA1_c11290 0.74 -0.1 1,168,664 - PGA1_c11290 0.75 +1.4 1,168,664 - PGA1_c11290 0.75 -0.0 1,168,664 - PGA1_c11290 0.75 +0.9 1,168,664 - PGA1_c11290 0.75 +0.4 1,168,664 - PGA1_c11290 0.75 +0.8 1,168,664 - PGA1_c11290 0.75 +0.8 1,168,674 - PGA1_c11290 0.76 +1.2 1,168,683 + PGA1_c11290 0.76 +0.5 1,168,688 - PGA1_c11290 0.76 -0.6 1,168,772 - PGA1_c11290 0.81 -0.8 1,168,808 + PGA1_c11290 0.83 +2.1 1,168,877 + PGA1_c11290 0.87 +0.4 1,168,877 + PGA1_c11290 0.87 -0.0 1,168,877 + PGA1_c11290 0.87 +0.0 1,168,877 + PGA1_c11290 0.87 -1.1 1,168,877 + PGA1_c11290 0.87 +1.8 1,168,877 + PGA1_c11290 0.87 -0.1 1,168,877 + PGA1_c11290 0.87 +0.8 1,168,885 - PGA1_c11290 0.87 +1.5 1,168,885 - PGA1_c11290 0.87 +1.6 1,168,885 - PGA1_c11290 0.87 +2.1 1,168,885 - PGA1_c11290 0.87 +1.3 1,168,885 - PGA1_c11290 0.87 +0.8 1,168,895 - PGA1_c11290 0.88 +0.4 1,168,925 + PGA1_c11290 0.90 +0.5 1,168,943 + -2.1 1,168,973 + -1.6 1,168,984 + -0.6 1,168,992 - +0.9 1,168,992 - -1.0 1,169,000 - -0.8 1,169,047 - +0.0 1,169,088 - -0.4 1,169,107 + +0.5 1,169,115 - +0.8 1,169,239 + +1.0 1,169,239 + -1.7 1,169,269 - +0.5 1,169,423 + PGA1_c11300 0.26 -0.6 1,169,483 - PGA1_c11300 0.37 +0.2 1,169,500 - PGA1_c11300 0.40 +0.9 1,169,508 - PGA1_c11300 0.41 +0.0 1,169,513 + PGA1_c11300 0.42 +0.4 1,169,559 + PGA1_c11300 0.50 +1.6 1,169,559 + PGA1_c11300 0.50 -0.2 1,169,564 + PGA1_c11300 0.51 +0.4 1,169,567 - PGA1_c11300 0.52 +0.1 1,169,567 - PGA1_c11300 0.52 -0.7 1,169,599 - PGA1_c11300 0.57 +0.9 1,169,673 + PGA1_c11300 0.71 +0.8 1,169,738 + PGA1_c11300 0.83 +1.0 1,169,827 - +1.8 1,169,842 - -0.5 1,169,842 - -0.2 1,169,844 + +0.2 1,169,844 + +1.1 1,169,852 - -0.7 1,169,876 + +0.2 1,169,900 - PGA1_c11310 0.14 +0.2 1,169,949 + PGA1_c11310 0.24 +0.3 1,169,990 - PGA1_c11310 0.32 +0.9 1,170,076 + PGA1_c11310 0.49 +3.4
Or see this region's nucleotide sequence