Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1062 and HP15_1063 are separated by 165 nucleotides HP15_1063 and HP15_1064 overlap by 4 nucleotides HP15_1064 and HP15_1065 are separated by 82 nucleotides
HP15_1062: HP15_1062 - rhomboid family protein, at 1,086,556 to 1,087,401
_1062
HP15_1063: HP15_1063 - protein containing DUF1315, at 1,087,567 to 1,087,857
_1063
HP15_1064: HP15_1064 - conserved hypothetical protein, at 1,087,854 to 1,088,693
_1064
HP15_1065: HP15_1065 - aminopeptidase N, at 1,088,776 to 1,091,418
_1065
Position (kb)
1087
1088 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1086.574 kb on - strand at 1086.588 kb on - strand at 1086.610 kb on - strand at 1086.610 kb on - strand at 1086.739 kb on + strand, within HP15_1062 at 1086.747 kb on - strand, within HP15_1062 at 1086.820 kb on - strand, within HP15_1062 at 1086.840 kb on - strand, within HP15_1062 at 1086.974 kb on - strand, within HP15_1062 at 1087.161 kb on + strand, within HP15_1062 at 1087.277 kb on + strand, within HP15_1062 at 1087.332 kb on + strand at 1087.446 kb on + strand at 1087.808 kb on - strand, within HP15_1063 at 1087.851 kb on + strand at 1087.935 kb on - strand at 1088.184 kb on + strand, within HP15_1064 at 1088.473 kb on - strand, within HP15_1064 at 1088.511 kb on + strand, within HP15_1064 at 1088.516 kb on + strand, within HP15_1064 at 1088.534 kb on - strand, within HP15_1064 at 1088.549 kb on - strand, within HP15_1064 at 1088.554 kb on + strand, within HP15_1064 at 1088.600 kb on - strand, within HP15_1064 at 1088.607 kb on + strand, within HP15_1064 at 1088.731 kb on - strand at 1088.798 kb on + strand at 1088.806 kb on - strand at 1088.835 kb on + strand at 1088.843 kb on + strand at 1088.843 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 1,086,574 - -1.0 1,086,588 - +0.1 1,086,610 - +0.6 1,086,610 - -0.9 1,086,739 + HP15_1062 0.22 +0.3 1,086,747 - HP15_1062 0.23 +1.0 1,086,820 - HP15_1062 0.31 -2.5 1,086,840 - HP15_1062 0.34 -0.1 1,086,974 - HP15_1062 0.49 -0.1 1,087,161 + HP15_1062 0.72 -0.8 1,087,277 + HP15_1062 0.85 -0.7 1,087,332 + +0.4 1,087,446 + +0.8 1,087,808 - HP15_1063 0.83 -1.1 1,087,851 + +0.7 1,087,935 - -0.5 1,088,184 + HP15_1064 0.39 -1.2 1,088,473 - HP15_1064 0.74 -3.1 1,088,511 + HP15_1064 0.78 -0.5 1,088,516 + HP15_1064 0.79 -0.3 1,088,534 - HP15_1064 0.81 +0.4 1,088,549 - HP15_1064 0.83 +0.4 1,088,554 + HP15_1064 0.83 -1.2 1,088,600 - HP15_1064 0.89 -0.6 1,088,607 + HP15_1064 0.90 +1.1 1,088,731 - +0.2 1,088,798 + -0.4 1,088,806 - +0.6 1,088,835 + -0.7 1,088,843 + +0.7 1,088,843 + -0.4
Or see this region's nucleotide sequence