Experiment: m.b. Furfuryl Alcohol 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c10970 and PGA1_c10980 are separated by 252 nucleotides PGA1_c10980 and PGA1_c10990 are separated by 315 nucleotides
PGA1_c10970: PGA1_c10970 - ribosome small subunit-dependent GTPase A, at 1,135,853 to 1,136,944
_c10970
PGA1_c10980: PGA1_c10980 - Uncharacterized protein conserved in bacteria, at 1,137,197 to 1,138,381
_c10980
PGA1_c10990: PGA1_c10990 - ATP-dependent transcriptional regulator, at 1,138,697 to 1,140,112
_c10990
Position (kb)
1137
1138
1139 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1136.219 kb on + strand, within PGA1_c10970 at 1136.246 kb on + strand, within PGA1_c10970 at 1136.267 kb on - strand, within PGA1_c10970 at 1136.288 kb on - strand, within PGA1_c10970 at 1136.288 kb on - strand, within PGA1_c10970 at 1136.288 kb on - strand, within PGA1_c10970 at 1136.305 kb on + strand, within PGA1_c10970 at 1136.313 kb on - strand, within PGA1_c10970 at 1136.348 kb on - strand, within PGA1_c10970 at 1136.348 kb on - strand, within PGA1_c10970 at 1136.408 kb on - strand, within PGA1_c10970 at 1136.421 kb on + strand, within PGA1_c10970 at 1136.421 kb on + strand, within PGA1_c10970 at 1136.451 kb on - strand, within PGA1_c10970 at 1136.546 kb on - strand, within PGA1_c10970 at 1136.636 kb on + strand at 1136.830 kb on + strand, within PGA1_c10970 at 1136.860 kb on + strand at 1136.932 kb on + strand at 1136.979 kb on + strand at 1136.987 kb on - strand at 1136.987 kb on - strand at 1137.059 kb on - strand at 1137.113 kb on + strand at 1137.137 kb on + strand at 1137.137 kb on + strand at 1137.137 kb on + strand at 1137.140 kb on - strand at 1137.145 kb on - strand at 1137.145 kb on - strand at 1137.145 kb on - strand at 1137.145 kb on - strand at 1137.145 kb on - strand at 1137.145 kb on - strand at 1137.184 kb on - strand at 1137.202 kb on - strand at 1137.224 kb on + strand at 1137.306 kb on - strand at 1137.330 kb on - strand, within PGA1_c10980 at 1137.366 kb on + strand, within PGA1_c10980 at 1137.379 kb on - strand, within PGA1_c10980 at 1137.381 kb on + strand, within PGA1_c10980 at 1137.482 kb on + strand, within PGA1_c10980 at 1137.483 kb on - strand, within PGA1_c10980 at 1137.483 kb on - strand, within PGA1_c10980 at 1137.483 kb on - strand, within PGA1_c10980 at 1137.483 kb on - strand, within PGA1_c10980 at 1137.483 kb on - strand, within PGA1_c10980 at 1137.483 kb on - strand, within PGA1_c10980 at 1137.483 kb on - strand, within PGA1_c10980 at 1137.483 kb on - strand, within PGA1_c10980 at 1137.492 kb on + strand, within PGA1_c10980 at 1137.493 kb on + strand, within PGA1_c10980 at 1137.493 kb on + strand at 1137.501 kb on - strand, within PGA1_c10980 at 1137.501 kb on - strand, within PGA1_c10980 at 1137.501 kb on - strand, within PGA1_c10980 at 1137.516 kb on + strand, within PGA1_c10980 at 1137.522 kb on - strand, within PGA1_c10980 at 1137.546 kb on + strand, within PGA1_c10980 at 1137.614 kb on - strand, within PGA1_c10980 at 1137.743 kb on + strand, within PGA1_c10980 at 1137.750 kb on + strand, within PGA1_c10980 at 1137.755 kb on - strand, within PGA1_c10980 at 1137.821 kb on - strand, within PGA1_c10980 at 1137.886 kb on - strand, within PGA1_c10980 at 1137.895 kb on + strand, within PGA1_c10980 at 1137.927 kb on + strand, within PGA1_c10980 at 1137.963 kb on + strand, within PGA1_c10980 at 1138.015 kb on - strand, within PGA1_c10980 at 1138.035 kb on - strand, within PGA1_c10980 at 1138.091 kb on + strand, within PGA1_c10980 at 1138.171 kb on + strand, within PGA1_c10980 at 1138.238 kb on - strand, within PGA1_c10980 at 1138.293 kb on + strand at 1138.399 kb on - strand at 1138.404 kb on - strand at 1138.440 kb on - strand at 1138.557 kb on - strand at 1138.560 kb on + strand at 1138.568 kb on - strand at 1138.665 kb on - strand at 1138.680 kb on - strand at 1138.698 kb on - strand at 1138.780 kb on - strand at 1138.787 kb on - strand at 1138.852 kb on + strand, within PGA1_c10990 at 1138.908 kb on + strand, within PGA1_c10990 at 1138.908 kb on + strand, within PGA1_c10990 at 1138.908 kb on + strand, within PGA1_c10990 at 1138.916 kb on - strand, within PGA1_c10990 at 1138.916 kb on - strand, within PGA1_c10990 at 1138.952 kb on + strand, within PGA1_c10990 at 1138.959 kb on - strand, within PGA1_c10990 at 1139.000 kb on + strand, within PGA1_c10990 at 1139.017 kb on + strand, within PGA1_c10990 at 1139.081 kb on + strand, within PGA1_c10990 at 1139.160 kb on + strand, within PGA1_c10990 at 1139.160 kb on + strand, within PGA1_c10990 at 1139.160 kb on + strand, within PGA1_c10990 at 1139.251 kb on - strand, within PGA1_c10990 at 1139.376 kb on + strand, within PGA1_c10990 at 1139.381 kb on + strand, within PGA1_c10990 at 1139.381 kb on + strand, within PGA1_c10990
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.032 vol% remove 1,136,219 + PGA1_c10970 0.34 -0.4 1,136,246 + PGA1_c10970 0.36 +1.4 1,136,267 - PGA1_c10970 0.38 -0.2 1,136,288 - PGA1_c10970 0.40 +1.4 1,136,288 - PGA1_c10970 0.40 -0.2 1,136,288 - PGA1_c10970 0.40 -1.5 1,136,305 + PGA1_c10970 0.41 -2.8 1,136,313 - PGA1_c10970 0.42 +0.6 1,136,348 - PGA1_c10970 0.45 -1.2 1,136,348 - PGA1_c10970 0.45 -2.0 1,136,408 - PGA1_c10970 0.51 -0.5 1,136,421 + PGA1_c10970 0.52 -0.2 1,136,421 + PGA1_c10970 0.52 -2.2 1,136,451 - PGA1_c10970 0.55 -0.2 1,136,546 - PGA1_c10970 0.63 -0.5 1,136,636 + -0.8 1,136,830 + PGA1_c10970 0.89 -0.8 1,136,860 + -1.4 1,136,932 + -0.1 1,136,979 + -0.0 1,136,987 - -2.7 1,136,987 - -2.1 1,137,059 - +1.8 1,137,113 + -1.1 1,137,137 + -1.8 1,137,137 + -0.2 1,137,137 + +0.4 1,137,140 - -0.5 1,137,145 - +0.6 1,137,145 - -1.2 1,137,145 - -1.2 1,137,145 - -0.5 1,137,145 - +0.1 1,137,145 - -0.5 1,137,184 - +0.8 1,137,202 - +0.8 1,137,224 + -1.5 1,137,306 - -2.4 1,137,330 - PGA1_c10980 0.11 -0.6 1,137,366 + PGA1_c10980 0.14 -0.5 1,137,379 - PGA1_c10980 0.15 -0.2 1,137,381 + PGA1_c10980 0.16 -1.2 1,137,482 + PGA1_c10980 0.24 -0.3 1,137,483 - PGA1_c10980 0.24 -2.2 1,137,483 - PGA1_c10980 0.24 +0.1 1,137,483 - PGA1_c10980 0.24 -2.7 1,137,483 - PGA1_c10980 0.24 -0.2 1,137,483 - PGA1_c10980 0.24 -2.4 1,137,483 - PGA1_c10980 0.24 +0.2 1,137,483 - PGA1_c10980 0.24 -0.5 1,137,483 - PGA1_c10980 0.24 -0.5 1,137,492 + PGA1_c10980 0.25 +0.2 1,137,493 + PGA1_c10980 0.25 +0.8 1,137,493 + +0.8 1,137,501 - PGA1_c10980 0.26 -0.4 1,137,501 - PGA1_c10980 0.26 -1.0 1,137,501 - PGA1_c10980 0.26 +0.6 1,137,516 + PGA1_c10980 0.27 -0.3 1,137,522 - PGA1_c10980 0.27 +1.8 1,137,546 + PGA1_c10980 0.29 -1.8 1,137,614 - PGA1_c10980 0.35 -0.3 1,137,743 + PGA1_c10980 0.46 -1.4 1,137,750 + PGA1_c10980 0.47 -0.2 1,137,755 - PGA1_c10980 0.47 -1.8 1,137,821 - PGA1_c10980 0.53 +2.2 1,137,886 - PGA1_c10980 0.58 +0.0 1,137,895 + PGA1_c10980 0.59 +2.9 1,137,927 + PGA1_c10980 0.62 -1.8 1,137,963 + PGA1_c10980 0.65 +0.6 1,138,015 - PGA1_c10980 0.69 -1.5 1,138,035 - PGA1_c10980 0.71 -0.8 1,138,091 + PGA1_c10980 0.75 -0.5 1,138,171 + PGA1_c10980 0.82 +0.8 1,138,238 - PGA1_c10980 0.88 -0.6 1,138,293 + -3.9 1,138,399 - -0.2 1,138,404 - -1.1 1,138,440 - +0.4 1,138,557 - +0.8 1,138,560 + -1.5 1,138,568 - -0.8 1,138,665 - -1.5 1,138,680 - -0.4 1,138,698 - -1.8 1,138,780 - -0.5 1,138,787 - -0.5 1,138,852 + PGA1_c10990 0.11 +0.3 1,138,908 + PGA1_c10990 0.15 +0.0 1,138,908 + PGA1_c10990 0.15 -2.0 1,138,908 + PGA1_c10990 0.15 -1.4 1,138,916 - PGA1_c10990 0.15 -0.8 1,138,916 - PGA1_c10990 0.15 -0.8 1,138,952 + PGA1_c10990 0.18 -0.2 1,138,959 - PGA1_c10990 0.19 +0.5 1,139,000 + PGA1_c10990 0.21 +0.2 1,139,017 + PGA1_c10990 0.23 -1.2 1,139,081 + PGA1_c10990 0.27 -2.7 1,139,160 + PGA1_c10990 0.33 +1.1 1,139,160 + PGA1_c10990 0.33 -1.8 1,139,160 + PGA1_c10990 0.33 -0.0 1,139,251 - PGA1_c10990 0.39 -0.3 1,139,376 + PGA1_c10990 0.48 +0.8 1,139,381 + PGA1_c10990 0.48 -2.3 1,139,381 + PGA1_c10990 0.48 -0.8
Or see this region's nucleotide sequence