Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1036 and HP15_1037 are separated by 6 nucleotides HP15_1037 and HP15_1038 overlap by 8 nucleotides
HP15_1036: HP15_1036 - transcriptional regulator, GntR family with aminotransferase domain protein, at 1,054,972 to 1,056,414
_1036
HP15_1037: HP15_1037 - two-component response regulator, at 1,056,421 to 1,057,077
_1037
HP15_1038: HP15_1038 - sensory box histidine kinase, at 1,057,070 to 1,058,584
_1038
Position (kb)
1056
1057
1058 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1055.630 kb on + strand, within HP15_1036 at 1055.676 kb on - strand, within HP15_1036 at 1055.677 kb on - strand, within HP15_1036 at 1055.696 kb on + strand, within HP15_1036 at 1055.696 kb on + strand, within HP15_1036 at 1055.696 kb on + strand, within HP15_1036 at 1055.748 kb on + strand, within HP15_1036 at 1055.756 kb on - strand, within HP15_1036 at 1055.756 kb on - strand, within HP15_1036 at 1055.865 kb on - strand, within HP15_1036 at 1055.933 kb on + strand, within HP15_1036 at 1055.982 kb on + strand, within HP15_1036 at 1055.995 kb on - strand, within HP15_1036 at 1056.031 kb on + strand, within HP15_1036 at 1056.141 kb on + strand, within HP15_1036 at 1056.144 kb on - strand, within HP15_1036 at 1056.144 kb on - strand, within HP15_1036 at 1056.144 kb on - strand, within HP15_1036 at 1056.144 kb on - strand, within HP15_1036 at 1056.149 kb on - strand, within HP15_1036 at 1056.149 kb on - strand, within HP15_1036 at 1056.166 kb on + strand, within HP15_1036 at 1056.169 kb on - strand, within HP15_1036 at 1056.183 kb on + strand, within HP15_1036 at 1056.183 kb on + strand, within HP15_1036 at 1056.187 kb on + strand, within HP15_1036 at 1056.191 kb on - strand, within HP15_1036 at 1056.210 kb on - strand, within HP15_1036 at 1056.226 kb on - strand, within HP15_1036 at 1056.261 kb on + strand, within HP15_1036 at 1056.327 kb on - strand at 1056.336 kb on + strand at 1056.336 kb on + strand at 1056.336 kb on + strand at 1056.336 kb on + strand at 1056.344 kb on - strand at 1056.344 kb on - strand at 1056.344 kb on - strand at 1056.344 kb on - strand at 1056.371 kb on + strand at 1056.375 kb on + strand at 1056.630 kb on + strand, within HP15_1037 at 1056.630 kb on + strand, within HP15_1037 at 1056.631 kb on + strand, within HP15_1037 at 1056.688 kb on + strand, within HP15_1037 at 1056.721 kb on + strand, within HP15_1037 at 1056.767 kb on + strand, within HP15_1037 at 1056.903 kb on + strand, within HP15_1037 at 1056.906 kb on - strand, within HP15_1037 at 1057.186 kb on + strand at 1057.244 kb on - strand, within HP15_1038 at 1057.246 kb on + strand, within HP15_1038 at 1057.268 kb on + strand, within HP15_1038 at 1057.326 kb on + strand, within HP15_1038 at 1057.334 kb on - strand, within HP15_1038 at 1057.380 kb on + strand, within HP15_1038 at 1057.380 kb on + strand, within HP15_1038 at 1057.390 kb on - strand, within HP15_1038 at 1057.397 kb on + strand, within HP15_1038 at 1057.407 kb on - strand, within HP15_1038 at 1057.456 kb on + strand, within HP15_1038 at 1057.587 kb on + strand, within HP15_1038 at 1057.881 kb on - strand, within HP15_1038 at 1057.881 kb on - strand, within HP15_1038
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 1,055,630 + HP15_1036 0.46 +0.6 1,055,676 - HP15_1036 0.49 +0.2 1,055,677 - HP15_1036 0.49 -0.1 1,055,696 + HP15_1036 0.50 -0.7 1,055,696 + HP15_1036 0.50 +2.3 1,055,696 + HP15_1036 0.50 -0.6 1,055,748 + HP15_1036 0.54 +0.9 1,055,756 - HP15_1036 0.54 -0.6 1,055,756 - HP15_1036 0.54 +1.3 1,055,865 - HP15_1036 0.62 -0.2 1,055,933 + HP15_1036 0.67 +0.3 1,055,982 + HP15_1036 0.70 -0.7 1,055,995 - HP15_1036 0.71 -0.6 1,056,031 + HP15_1036 0.73 +0.5 1,056,141 + HP15_1036 0.81 +0.3 1,056,144 - HP15_1036 0.81 -0.3 1,056,144 - HP15_1036 0.81 -0.2 1,056,144 - HP15_1036 0.81 +1.3 1,056,144 - HP15_1036 0.81 -1.2 1,056,149 - HP15_1036 0.82 -0.5 1,056,149 - HP15_1036 0.82 +0.9 1,056,166 + HP15_1036 0.83 -0.1 1,056,169 - HP15_1036 0.83 -0.1 1,056,183 + HP15_1036 0.84 -3.2 1,056,183 + HP15_1036 0.84 -0.2 1,056,187 + HP15_1036 0.84 +1.0 1,056,191 - HP15_1036 0.84 -0.8 1,056,210 - HP15_1036 0.86 +0.6 1,056,226 - HP15_1036 0.87 -2.0 1,056,261 + HP15_1036 0.89 -1.5 1,056,327 - +0.0 1,056,336 + -0.5 1,056,336 + -0.6 1,056,336 + +0.6 1,056,336 + -0.8 1,056,344 - +1.8 1,056,344 - -0.6 1,056,344 - +0.4 1,056,344 - -1.5 1,056,371 + +0.4 1,056,375 + -0.6 1,056,630 + HP15_1037 0.32 +0.3 1,056,630 + HP15_1037 0.32 +0.6 1,056,631 + HP15_1037 0.32 +1.7 1,056,688 + HP15_1037 0.41 +0.0 1,056,721 + HP15_1037 0.46 +0.2 1,056,767 + HP15_1037 0.53 +0.6 1,056,903 + HP15_1037 0.73 -1.3 1,056,906 - HP15_1037 0.74 +0.7 1,057,186 + -1.6 1,057,244 - HP15_1038 0.11 +1.5 1,057,246 + HP15_1038 0.12 +0.4 1,057,268 + HP15_1038 0.13 -0.2 1,057,326 + HP15_1038 0.17 -1.0 1,057,334 - HP15_1038 0.17 -0.4 1,057,380 + HP15_1038 0.20 -0.4 1,057,380 + HP15_1038 0.20 -0.3 1,057,390 - HP15_1038 0.21 +0.1 1,057,397 + HP15_1038 0.22 +0.1 1,057,407 - HP15_1038 0.22 -0.1 1,057,456 + HP15_1038 0.25 +0.0 1,057,587 + HP15_1038 0.34 +0.9 1,057,881 - HP15_1038 0.54 -0.4 1,057,881 - HP15_1038 0.54 +0.0
Or see this region's nucleotide sequence