Experiment: m.b. Doxycycline hyclate 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_978 and HP15_979 are separated by 121 nucleotides HP15_979 and HP15_980 are separated by 256 nucleotides HP15_980 and HP15_981 overlap by 73 nucleotides HP15_981 and HP15_982 are separated by 140 nucleotides
HP15_978: HP15_978 - major facilitator superfamily MFS_1, at 987,262 to 988,461
_978
HP15_979: HP15_979 - MOSC domain containing protein, at 988,583 to 989,380
_979
HP15_980: HP15_980 - hypothetical protein, at 989,637 to 990,023
_980
HP15_981: HP15_981 - conserved hypothetical protein, at 989,951 to 990,163
_981
HP15_982: HP15_982 - conserved hypothetical protein, membrane, at 990,304 to 993,279
_982
Position (kb) 988
989
990 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 987.621 kb on - strand, within HP15_978 at 987.656 kb on + strand, within HP15_978 at 987.674 kb on - strand, within HP15_978 at 987.701 kb on - strand, within HP15_978 at 987.724 kb on + strand, within HP15_978 at 987.724 kb on + strand, within HP15_978 at 987.732 kb on - strand, within HP15_978 at 987.942 kb on + strand, within HP15_978 at 987.962 kb on + strand, within HP15_978 at 987.996 kb on + strand, within HP15_978 at 988.115 kb on + strand, within HP15_978 at 988.142 kb on - strand, within HP15_978 at 988.199 kb on + strand, within HP15_978 at 988.204 kb on + strand, within HP15_978 at 988.204 kb on + strand, within HP15_978 at 988.207 kb on - strand, within HP15_978 at 988.267 kb on - strand, within HP15_978 at 988.267 kb on - strand, within HP15_978 at 988.334 kb on + strand, within HP15_978 at 988.352 kb on + strand at 988.399 kb on + strand at 988.399 kb on + strand at 988.435 kb on + strand at 988.454 kb on - strand at 988.454 kb on - strand at 988.565 kb on + strand at 988.677 kb on - strand, within HP15_979 at 988.729 kb on + strand, within HP15_979 at 988.764 kb on - strand, within HP15_979 at 989.000 kb on - strand, within HP15_979 at 989.021 kb on + strand, within HP15_979 at 989.260 kb on + strand, within HP15_979 at 989.303 kb on + strand at 989.389 kb on - strand at 989.399 kb on - strand at 989.415 kb on + strand at 989.553 kb on - strand at 989.580 kb on - strand at 989.649 kb on - strand at 989.663 kb on + strand at 989.830 kb on - strand, within HP15_980 at 989.852 kb on + strand, within HP15_980 at 989.852 kb on + strand, within HP15_980 at 989.860 kb on - strand, within HP15_980 at 989.860 kb on - strand, within HP15_980 at 989.929 kb on + strand, within HP15_980 at 989.959 kb on + strand at 990.009 kb on - strand at 990.018 kb on + strand at 990.097 kb on + strand, within HP15_981 at 990.097 kb on + strand, within HP15_981 at 990.105 kb on - strand, within HP15_981 at 990.211 kb on + strand at 990.229 kb on - strand at 990.229 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.032 mg/ml remove 987,621 - HP15_978 0.30 +0.7 987,656 + HP15_978 0.33 +0.1 987,674 - HP15_978 0.34 +0.0 987,701 - HP15_978 0.37 -3.8 987,724 + HP15_978 0.39 +0.5 987,724 + HP15_978 0.39 +1.1 987,732 - HP15_978 0.39 +0.8 987,942 + HP15_978 0.57 -0.3 987,962 + HP15_978 0.58 -0.2 987,996 + HP15_978 0.61 +0.3 988,115 + HP15_978 0.71 +0.4 988,142 - HP15_978 0.73 +0.4 988,199 + HP15_978 0.78 -1.1 988,204 + HP15_978 0.79 +0.2 988,204 + HP15_978 0.79 -0.8 988,207 - HP15_978 0.79 +0.1 988,267 - HP15_978 0.84 +0.1 988,267 - HP15_978 0.84 -1.1 988,334 + HP15_978 0.89 -0.6 988,352 + +0.1 988,399 + -0.1 988,399 + +1.0 988,435 + -0.1 988,454 - +1.0 988,454 - +0.0 988,565 + -0.9 988,677 - HP15_979 0.12 -0.7 988,729 + HP15_979 0.18 +0.4 988,764 - HP15_979 0.23 +0.7 989,000 - HP15_979 0.52 +0.3 989,021 + HP15_979 0.55 +1.2 989,260 + HP15_979 0.85 -0.6 989,303 + +0.2 989,389 - +0.0 989,399 - +0.1 989,415 + +1.0 989,553 - +0.7 989,580 - -0.1 989,649 - -0.1 989,663 + +1.8 989,830 - HP15_980 0.50 -0.4 989,852 + HP15_980 0.56 +0.3 989,852 + HP15_980 0.56 -1.0 989,860 - HP15_980 0.58 +0.3 989,860 - HP15_980 0.58 -0.5 989,929 + HP15_980 0.75 -0.5 989,959 + -0.8 990,009 - +0.1 990,018 + -0.7 990,097 + HP15_981 0.69 -1.1 990,097 + HP15_981 0.69 -1.6 990,105 - HP15_981 0.72 -1.4 990,211 + -1.4 990,229 - -1.6 990,229 - +0.9
Or see this region's nucleotide sequence