Strain Fitness in Shewanella amazonensis SB2B around Sama_3353

Experiment: L-Histidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Histidine (N)
3,980,266	+		Sama_3352	0.71	+2.1
3,980,266	+		Sama_3352	0.71	+0.5
3,980,266	+		Sama_3352	0.71	+0.4
3,980,266	+		Sama_3352	0.71	-0.7
3,980,266	+		Sama_3352	0.71	-1.6
3,980,266	+		Sama_3352	0.71	+1.8
3,980,267	-		Sama_3352	0.71	-1.3
3,980,267	-		Sama_3352	0.71	+1.1
3,980,267	-		Sama_3352	0.71	+0.9
3,980,270	+		Sama_3352	0.71	-0.7
3,980,270	+		Sama_3352	0.71	-1.0
3,980,270	+		Sama_3352	0.71	-1.2
3,980,271	-		Sama_3352	0.71	+3.3
3,980,271	-		Sama_3352	0.71	+0.0
3,980,271	-		Sama_3352	0.71	-1.7
3,980,289	+		Sama_3352	0.72	+5.2
3,980,289	+		Sama_3352	0.72	+0.5
3,980,289	+		Sama_3352	0.72	-0.4
3,980,290	-		Sama_3352	0.72	-0.9
3,980,290	-		Sama_3352	0.72	+3.0
3,980,290	-		Sama_3352	0.72	+0.2
3,980,290	-		Sama_3352	0.72	-0.8
3,980,313	+		Sama_3352	0.73	+4.2
3,980,314	-		Sama_3352	0.74	-2.0
3,980,314	-		Sama_3352	0.74	+0.2
3,980,319	+		Sama_3352	0.74	-0.3
3,980,320	-		Sama_3352	0.74	-1.4
3,980,320	-		Sama_3352	0.74	+2.0
3,980,320	-		Sama_3352	0.74	-0.6
3,980,327	+		Sama_3352	0.74	-1.5
3,980,328	-		Sama_3352	0.74	+1.3
3,980,328	-		Sama_3352	0.74	-0.1
3,980,328	-		Sama_3352	0.74	-0.7
3,980,347	-		Sama_3352	0.76	+0.3
3,980,347	-		Sama_3352	0.76	+0.3
3,980,347	-		Sama_3352	0.76	+2.5
3,980,382	+		Sama_3352	0.78	+0.6
3,980,382	+		Sama_3352	0.78	+1.8
3,980,382	+		Sama_3352	0.78	+1.7
3,980,383	-		Sama_3352	0.78	+1.1
3,980,383	-		Sama_3352	0.78	-0.1
3,980,383	-		Sama_3352	0.78	+1.4
3,980,383	-		Sama_3352	0.78	+0.8
3,980,383	-		Sama_3352	0.78	+1.5
3,980,442	+		Sama_3352	0.81	+0.7
3,980,442	+		Sama_3352	0.81	+2.4
3,980,442	+		Sama_3352	0.81	+0.3
3,980,443	-		Sama_3352	0.81	+1.0
3,980,467	+		Sama_3352	0.83	+0.1
3,980,467	+		Sama_3352	0.83	+4.2
3,980,467	+		Sama_3352	0.83	-1.6
3,980,468	-		Sama_3352	0.83	+0.3
3,980,470	+		Sama_3352	0.83	+0.8
3,980,470	+		Sama_3352	0.83	-1.6
3,980,471	-		Sama_3352	0.83	-2.8
3,980,471	-		Sama_3352	0.83	-0.8
3,980,471	-		Sama_3352	0.83	-0.6
3,980,471	-		Sama_3352	0.83	-2.3
3,980,490	+		Sama_3352	0.84	-1.7
3,980,490	+		Sama_3352	0.84	-1.2
3,980,491	-		Sama_3352	0.84	+0.9
3,980,499	-		Sama_3352	0.85	-1.5
3,980,499	-		Sama_3352	0.85	+5.2
3,980,508	+		Sama_3352	0.85	-1.6
3,980,508	+		Sama_3352	0.85	-0.1
3,980,508	+		Sama_3352	0.85	+0.6
3,980,509	-		Sama_3352	0.85	-1.7
3,980,548	+		Sama_3352	0.88	+0.6
3,980,548	+		Sama_3352	0.88	-0.7
3,980,548	+		Sama_3352	0.88	-1.3
3,980,549	-		Sama_3352	0.88	+1.6
3,980,549	-		Sama_3352	0.88	+0.1
3,980,549	-		Sama_3352	0.88	+1.7
3,980,602	+				+0.8
3,980,602	+				-0.9
3,980,603	-				-0.1
3,980,609	+				+0.8
3,980,609	+				+1.4
3,980,610	-				-1.4
3,980,610	-				-0.6
3,980,610	-				+0.7
3,980,615	+				-2.4
3,980,616	-				-0.0
3,980,616	-				-1.4
3,980,616	-				-0.0
3,980,631	+				+0.9
3,980,631	+				-0.4
3,980,631	+				-1.2
3,980,632	-				+0.1
3,980,650	-				+0.0
3,980,745	+				+0.2
3,980,746	-				-1.9
3,980,790	+				+0.5
3,980,790	+				-1.8
3,980,790	+				+0.4
3,980,793	+				+1.8
3,980,794	-				+1.0
3,980,795	+				-2.2
3,980,839	+				+2.0
3,980,840	-				+1.7
3,981,267	+				+1.7
3,981,267	+				+3.3
3,981,268	-				-0.6
3,981,268	-				-0.6
3,981,268	-				-0.6
3,981,292	+				+1.5
3,981,292	+				-0.8
3,981,292	+				+4.2
3,981,293	-				+2.3
3,981,293	-				-0.1
3,981,293	-				+1.0
3,981,294	+				+2.9
3,981,295	-				+1.7
3,981,295	-				+1.2
3,981,295	-				+2.5
3,981,295	-				+6.6
3,981,372	-		Sama_3353	0.13	+3.0
3,981,482	+		Sama_3353	0.26	+3.3
3,981,483	-		Sama_3353	0.26	+3.0
3,981,509	-		Sama_3353	0.29	+1.6
3,981,587	+		Sama_3353	0.38	+3.7
3,981,587	+		Sama_3353	0.38	+2.5
3,981,587	+		Sama_3353	0.38	+3.7
3,981,588	-		Sama_3353	0.38	+1.6
3,981,588	-		Sama_3353	0.38	+3.2
3,981,588	-		Sama_3353	0.38	+2.1
3,981,610	+		Sama_3353	0.41	+2.7
3,981,610	+		Sama_3353	0.41	+2.1
3,981,610	+		Sama_3353	0.41	+1.2
3,981,610	+		Sama_3353	0.41	+2.6
3,981,611	-		Sama_3353	0.41	+2.5
3,981,611	-		Sama_3353	0.41	+1.7
3,981,611	-		Sama_3353	0.41	+1.3
3,981,839	+		Sama_3353	0.68	+2.2
3,981,839	+		Sama_3353	0.68	+4.4
3,981,839	+		Sama_3353	0.68	+1.0
3,981,839	+		Sama_3353	0.68	+1.2
3,981,901	+		Sama_3353	0.75	+1.8
3,981,950	-		Sama_3353	0.81	+2.6
3,981,962	-		Sama_3353	0.82	-1.3
3,982,071	-				+1.4
3,982,088	-				+2.1
3,982,088	-				+3.2
3,982,088	-				+1.7
3,982,089	+				+3.0
3,982,089	+				-1.9
3,982,089	+				+4.4
3,982,089	+				+5.9
3,982,089	+				+2.1
3,982,090	-				-1.8
3,982,090	-				+4.6
3,982,090	-				-0.9
3,982,090	-				+0.4
3,982,111	+				+3.3
3,982,111	+				+2.6
3,982,111	+				-0.6
3,982,111	+				+2.4
3,982,111	+				+1.9
3,982,111	+				+3.3
3,982,111	+				-0.9
3,982,111	+				+3.7
3,982,111	+				-0.1
3,982,111	+				+0.9
3,982,111	+				+2.3
3,982,111	+				+2.5
3,982,112	-				-0.1
3,982,112	-				+2.5
3,982,112	-				+0.2
3,982,112	-				+0.4
3,982,112	-				+0.2
3,982,112	-				+3.8
3,982,112	-				+0.7
3,982,112	-				+2.5
3,982,112	-				+1.2
3,982,112	-				-0.0
3,982,112	-				+3.5
3,982,115	+				+3.6
3,982,115	+				+2.1
3,982,115	+				+2.0
3,982,115	+				-0.4
3,982,116	-				+2.7
3,982,116	-				+2.0
3,982,116	-				+2.5
3,982,126	+				+3.5
3,982,180	+				+2.4
3,982,180	+				+1.5
3,982,180	+				-0.1
3,982,180	+				-0.0
3,982,180	+				-0.4
3,982,180	+				+2.6
3,982,180	+				+2.5
3,982,181	-				-1.1
3,982,181	-				+1.6
3,982,181	-				+0.3
3,982,183	+				-0.7
3,982,183	+				+1.4
3,982,183	+				-0.1
3,982,183	+				+2.4
3,982,184	-				-0.1
3,982,184	-				-1.9
3,982,184	-				-1.0
3,982,228	+				+1.3
3,982,228	+				-2.1
3,982,229	-				+0.3
3,982,255	+				-0.7
3,982,347	+				-1.4
3,982,347	+				-0.3
3,982,348	-				-2.1
3,982,402	+				-0.6
3,982,515	+		Sama_3354	0.15	+0.3
3,982,515	+		Sama_3354	0.15	+1.5
3,982,515	+		Sama_3354	0.15	-1.4
3,982,515	+		Sama_3354	0.15	-0.8
3,982,550	+		Sama_3354	0.17	-2.0
3,982,551	-		Sama_3354	0.17	-0.4
3,982,551	-		Sama_3354	0.17	+1.9
3,982,578	+		Sama_3354	0.19	+0.9
3,982,620	+		Sama_3354	0.21	-2.2
3,982,620	+		Sama_3354	0.21	-0.9
3,982,620	+		Sama_3354	0.21	-2.3
3,982,621	-		Sama_3354	0.21	-1.3
3,982,621	-		Sama_3354	0.21	-2.1
3,982,621	-		Sama_3354	0.21	-0.9
3,982,621	-		Sama_3354	0.21	-0.6
3,982,621	-		Sama_3354	0.21	+1.2
3,982,701	+		Sama_3354	0.26	-2.2
3,982,702	-		Sama_3354	0.26	-0.3
3,982,702	-		Sama_3354	0.26	+0.1
3,982,787	+		Sama_3354	0.30	-1.7
3,982,787	+		Sama_3354	0.30	-0.3
3,982,787	+		Sama_3354	0.30	-1.0
3,982,787	+		Sama_3354	0.30	-1.4
3,982,788	-		Sama_3354	0.31	-1.5
3,982,788	-		Sama_3354	0.31	+0.3
3,982,788	-		Sama_3354	0.31	-0.8
3,982,812	+		Sama_3354	0.32	-0.8
3,982,812	+		Sama_3354	0.32	-1.4
3,982,812	+		Sama_3354	0.32	-0.0
3,982,812	+		Sama_3354	0.32	+0.7
3,982,812	+		Sama_3354	0.32	-2.2
3,982,812	+		Sama_3354	0.32	-1.5
3,982,813	-		Sama_3354	0.32	-1.4
3,982,813	-		Sama_3354	0.32	-0.4
3,982,813	-		Sama_3354	0.32	-0.1
3,982,813	-		Sama_3354	0.32	+0.9
3,982,813	-		Sama_3354	0.32	-2.2
3,982,813	-		Sama_3354	0.32	-1.8
3,982,813	-		Sama_3354	0.32	-1.3
3,982,813	-		Sama_3354	0.32	-0.6
3,982,839	-		Sama_3354	0.33	-1.7
3,982,851	+		Sama_3354	0.34	-0.2
3,982,851	+		Sama_3354	0.34	-2.4
3,982,851	+		Sama_3354	0.34	+0.4
3,982,851	+		Sama_3354	0.34	-1.8
3,982,851	+		Sama_3354	0.34	+1.1
3,982,852	-		Sama_3354	0.34	-0.9
3,982,877	-		Sama_3354	0.36	-0.1
3,982,971	+		Sama_3354	0.41	-0.6
3,983,032	-		Sama_3354	0.44	-0.8
3,983,051	-		Sama_3354	0.45	-1.8